WormBase Tree Display for Gene: WBGene00004229
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| WBGene00004229 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T07H8 | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | ptr-15 | Person_evidence | WBPerson349 | |||||
| Sequence_name | T07H8.6 | ||||||||
| Molecular_name | T07H8.6 | ||||||||
| T07H8.6.1 | |||||||||
| CE18227 | |||||||||
| Other_name | bus-13 | Paper_evidence | WBPaper00051907 | ||||||
| Person_evidence | WBPerson261 | ||||||||
| WBPerson349 | |||||||||
| CELE_T07H8.6 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | ptr-15 | ||||||||
| DB_info | Database | AceView | gene | 5H444 | |||||
| WormQTL | gene | WBGene00004229 | |||||||
| WormFlux | gene | WBGene00004229 | |||||||
| NDB | locus_tag | CELE_T07H8.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004229|UniProtKB=O61894 | |||||||
| family | PTHR10796 | ||||||||
| NCBI | gene | 191749 | |||||||
| RefSeq | protein | NM_072359.4 | |||||||
| TREEFAM | TREEFAM_ID | TF331806 | |||||||
| TrEMBL | UniProtAcc | O61894 | |||||||
| UniProt_GCRP | UniProtAcc | O61894 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 07 Aug 2020 17:57:38 | WBPerson1983 | Event | Acquires_merge | WBGene00044626 | ||||
| 3 | 10 Sep 2020 13:50:48 | WBPerson1983 | Name_change | Other_name | bus-13 | ||||
| Acquires_merge | WBGene00044626 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (49) | |||||||||
| Strain | WBStrain00004738 | ||||||||
| WBStrain00004663 | |||||||||
| WBStrain00004742 | |||||||||
| WBStrain00051116 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036576 | ||||||||
| 00036577 | |||||||||
| 00036578 | |||||||||
| 00036579 | |||||||||
| 00036580 | |||||||||
| 00036581 | |||||||||
| 00112521 | |||||||||
| Ortholog (41) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-15 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-15has no known function in vivo. | Paper_evidence | WBPaper00004265 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Is an ortholog of human PTCHD3 (patched domain containing 3 (gene/pseudogene)). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07H8.6 | |||||||
| Corresponding_transcript | T07H8.6.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf652745 | ||||||||
| WBsf652746 | |||||||||
| WBsf669100 | |||||||||
| WBsf1000406 | |||||||||
| WBsf1019887 | |||||||||
| WBsf233880 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052815 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076955 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035330 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018414 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076923 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024252 | ||||||||
| Expr1032081 | |||||||||
| Expr1156416 | |||||||||
| Expr2015158 | |||||||||
| Expr2033396 | |||||||||
| Drives_construct | WBCnstr00035620 | ||||||||
| Construct_product | WBCnstr00035620 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (193) | |||||||||
| Interaction (142) | |||||||||
| Map_info | Map | V | Position | 0.483383 | Error | 0.000265 | |||
| Positive | Positive_clone | T07H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004265 | ||||||||
| WBPaper00026735 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00029153 | |||||||||
| WBPaper00031925 | |||||||||
| WBPaper00037578 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043238 | |||||||||
| WBPaper00049182 | |||||||||
| WBPaper00051907 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064105 | |||||||||
| WBPaper00065106 | |||||||||
| WBPaper00065859 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
