WormBase Tree Display for Gene: WBGene00004222
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| WBGene00004222 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F44F4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptr-8 | Person_evidence | WBPerson349 | |||||
| Sequence_name | F44F4.4 | ||||||||
| Molecular_name | F44F4.4 | ||||||||
| F44F4.4.1 | |||||||||
| CE01000 | |||||||||
| Other_name | CELE_F44F4.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ptr-8 | ||||||||
| DB_info | Database | AceView | gene | 2L183 | |||||
| WormQTL | gene | WBGene00004222 | |||||||
| WormFlux | gene | WBGene00004222 | |||||||
| NDB | locus_tag | CELE_F44F4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004222|UniProtKB=Q20404 | |||||||
| family | PTHR10796 | ||||||||
| NCBI | gene | 174678 | |||||||
| RefSeq | protein | NM_063942.6 | |||||||
| TREEFAM | TREEFAM_ID | TF331806 | |||||||
| TrEMBL | UniProtAcc | Q20404 | |||||||
| UniProt_GCRP | UniProtAcc | Q20404 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (61) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068055 | ||||||||
| 00068056 | |||||||||
| 00068057 | |||||||||
| 00068058 | |||||||||
| 00068059 | |||||||||
| 00068060 | |||||||||
| 00112512 | |||||||||
| Ortholog (27) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-8 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-8 isweakly required for normal molting from L4 to adult stages; PTR-8 isalso required for normal growth to full size and locomotion; PTR-8 isexpressed in hypodermis. | Paper_evidence | WBPaper00004265 | |||||
| WBPaper00026596 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Expressed in hypodermis and rectum. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44F4.4 | |||||||
| Corresponding_transcript | F44F4.4.1 | ||||||||
| Other_sequence | Name_isotig02160 | ||||||||
| Dviv_isotig21035 | |||||||||
| Dviv_isotig21036 | |||||||||
| Acan_isotig07632 | |||||||||
| Oden_isotig19722 | |||||||||
| Dviv_isotig20408 | |||||||||
| Associated_feature | WBsf989520 | ||||||||
| WBsf222082 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047323 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001500 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032261 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001264 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076948 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076916 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014955 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2067 | ||||||||
| Expr1017982 | |||||||||
| Expr1151174 | |||||||||
| Expr2015174 | |||||||||
| Expr2033412 | |||||||||
| Drives_construct | WBCnstr00035627 | ||||||||
| Construct_product | WBCnstr00035627 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (216) | |||||||||
| Interaction | WBInteraction000140439 | ||||||||
| WBInteraction000141398 | |||||||||
| WBInteraction000351878 | |||||||||
| WBInteraction000385069 | |||||||||
| WBInteraction000406657 | |||||||||
| WBInteraction000407281 | |||||||||
| WBInteraction000409575 | |||||||||
| WBInteraction000453122 | |||||||||
| WBInteraction000472506 | |||||||||
| Map_info | Map | II | Position | 3.13127 | Error | 9.3e-05 | |||
| Positive | Positive_clone | F44F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004265 | ||||||||
| WBPaper00025183 | |||||||||
| WBPaper00026596 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062715 | |||||||||
| WBPaper00066265 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
