WormBase Tree Display for Gene: WBGene00004226
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| WBGene00004226 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K07A3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptr-12 | Person_evidence | WBPerson349 | |||||
| Sequence_name | K07A3.2 | ||||||||
| Molecular_name | K07A3.2a | ||||||||
| K07A3.2a.1 | |||||||||
| CE39591 | |||||||||
| K07A3.2b | |||||||||
| Other_name | CELE_K07A3.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ptr-12 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (180) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022266 | ||||||||
| 00022267 | |||||||||
| 00022268 | |||||||||
| 00022269 | |||||||||
| 00022270 | |||||||||
| 00022271 | |||||||||
| 00112516 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-12 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-12is weakly required for normal molting from L4 to adult stages growth tofull size; PTR-12 is also required for normal locomotion. | Paper_evidence | WBPaper00026841 | |||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07A3.2a | |||||||
| Corresponding_CDS_history | K07A3.2:wp124 | ||||||||
| K07A3.2:wp129 | |||||||||
| K07A3.2a:wp153 | |||||||||
| K07A3.2b:wp153 | |||||||||
| K07A3.2b:wp243 | |||||||||
| Corresponding_transcript | K07A3.2b | ||||||||
| K07A3.2a.1 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf663955 | ||||||||
| WBsf663956 | |||||||||
| WBsf663957 | |||||||||
| WBsf663958 | |||||||||
| WBsf663959 | |||||||||
| WBsf982911 | |||||||||
| WBsf219048 | |||||||||
| WBsf219049 | |||||||||
| WBsf219050 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050104 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076920 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076952 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011549 | ||||||||
| Expr1153806 | |||||||||
| Expr2015155 | |||||||||
| Expr2033393 | |||||||||
| Drives_construct | WBCnstr00035623 | ||||||||
| Construct_product | WBCnstr00035623 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (146) | |||||||||
| Interaction | WBInteraction000142184 | ||||||||
| WBInteraction000364054 | |||||||||
| Map_info | Map | I | Position | -8.24928 | Error | 0.022055 | |||
| Positive | Positive_clone | K07A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004265 | ||||||||
| WBPaper00026841 | |||||||||
| WBPaper00033099 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
