WormBase Tree Display for Gene: WBGene00004220
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WBGene00004220 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C53C11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | ptr-5 | Person_evidence | WBPerson349 | |||||
Sequence_name | C53C11.3 | ||||||||
Molecular_name | C53C11.3 | ||||||||
C53C11.3.1 | |||||||||
CE34277 | |||||||||
Other_name | CELE_C53C11.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | ptr-5 | ||||||||
DB_info | Database | AceView | gene | XR939 | |||||
WormQTL | gene | WBGene00004220 | |||||||
WormFlux | gene | WBGene00004220 | |||||||
NDB | locus_tag | CELE_C53C11.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004220|UniProtKB=P91184 | |||||||
family | PTHR10796 | ||||||||
NCBI | gene | 181764 | |||||||
RefSeq | protein | NM_078409.9 | |||||||
TREEFAM | TREEFAM_ID | TF331806 | |||||||
TrEMBL | UniProtAcc | P91184 | |||||||
UniProt_GCRP | UniProtAcc | P91184 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ptr | ||||||||
Allele (99) | |||||||||
Strain | WBStrain00036296 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00050214 | ||||||||
00050215 | |||||||||
00050216 | |||||||||
00050217 | |||||||||
00050218 | |||||||||
00050219 | |||||||||
00112510 | |||||||||
Ortholog (31) | |||||||||
Paralog (30) | |||||||||
Structured_description | Concise_description | ptr-5 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-5 isweakly required for normal molting from L4 to adult stages; PTR-5 isalso required for normal growth to full size and locomotion; PTR-5 isexpressed in head and tail neurons, and in ventral nerve cord. | Paper_evidence | WBPaper00006525 | |||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C53C11.3 | |||||||
Corresponding_CDS_history | C53C11.3:wp102 | ||||||||
Corresponding_transcript | C53C11.3.1 | ||||||||
Other_sequence (20) | |||||||||
Associated_feature (17) | |||||||||
Experimental_info | RNAi_result | WBRNAi00076913 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076945 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012355 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043086 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr5578 | ||||||||
Expr1025959 | |||||||||
Expr1032076 | |||||||||
Expr1147049 | |||||||||
Expr2015172 | |||||||||
Expr2033410 | |||||||||
Drives_construct | WBCnstr00003062 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (142) | |||||||||
Interaction | WBInteraction000358808 | ||||||||
WBInteraction000369593 | |||||||||
WBInteraction000440688 | |||||||||
Map_info | Map | X | Position | 24.088 | Error | 0.000535 | |||
Positive | Positive_clone | C53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5589 | |||||||
4748 | |||||||||
5259 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004265 | ||||||||
WBPaper00026841 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |