WormBase Tree Display for Gene: WBGene00004218
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| WBGene00004218 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_II | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptr-3 | Person_evidence | WBPerson349 | |||||
| Sequence_name | C41D7.2 | ||||||||
| Molecular_name | C41D7.2 | ||||||||
| C41D7.2.1 | |||||||||
| CE50723 | |||||||||
| C41D7.2.2 | |||||||||
| Other_name | CELE_C41D7.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ptr-3 | ||||||||
| DB_info | Database | AceView | gene | 2A654 | |||||
| WormQTL | gene | WBGene00004218 | |||||||
| WormFlux | gene | WBGene00004218 | |||||||
| NDB | locus_tag | CELE_C41D7.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004218|UniProtKB=O16530 | |||||||
| family | PTHR10796 | ||||||||
| NCBI | gene | 173426 | |||||||
| RefSeq | protein | NM_061317.7 | |||||||
| TREEFAM | TREEFAM_ID | TF331806 | |||||||
| TrEMBL | UniProtAcc | O16530 | |||||||
| UniProt_GCRP | UniProtAcc | O16530 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (98) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028256 | ||||||||
| 00028257 | |||||||||
| 00028258 | |||||||||
| 00028259 | |||||||||
| 00028260 | |||||||||
| 00028261 | |||||||||
| 00112508 | |||||||||
| Ortholog (28) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-3 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-3 isweakly required for normal molting from L4 to adult stages; PTR-3 isalso required for normal adult alae formation, growth to full size, andvulval morphogenesis. | Paper_evidence | WBPaper00004265 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C41D7.2 | |||||||
| Corresponding_CDS_history | C41D7.2:wp248 | ||||||||
| Corresponding_transcript | C41D7.2.1 | ||||||||
| C41D7.2.2 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf665315 | ||||||||
| WBsf986390 | |||||||||
| WBsf986391 | |||||||||
| WBsf986392 | |||||||||
| WBsf1011380 | |||||||||
| WBsf222597 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1016351 | ||||||||
| Expr1146285 | |||||||||
| Expr2015170 | |||||||||
| Expr2033408 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (172) | |||||||||
| Map_info | Map | II | Position | -15.6178 | Error | 0.001207 | |||
| Positive | Positive_clone | C41D7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004265 | ||||||||
| WBPaper00026841 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
