WormBase Tree Display for Gene: WBGene00004221
expand all nodes | collapse all nodes | view schema
| WBGene00004221 | SMap | S_parent | Sequence | C54A12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ptr-6 | Person_evidence | WBPerson349 | |||||
| Sequence_name | C54A12.1 | ||||||||
| Molecular_name | C54A12.1 | ||||||||
| C54A12.1.1 | |||||||||
| CE39341 | |||||||||
| Other_name | CELE_C54A12.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ptr-6 | ||||||||
| DB_info | Database | AceView | gene | 2F534 | |||||
| WormQTL | gene | WBGene00004221 | |||||||
| WormFlux | gene | WBGene00004221 | |||||||
| NDB | locus_tag | CELE_C54A12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004221|UniProtKB=Q09938 | |||||||
| family | PTHR10796 | ||||||||
| NCBI | gene | 173898 | |||||||
| RefSeq | protein | NM_062585.6 | |||||||
| TREEFAM | TREEFAM_ID | TF331806 | |||||||
| TrEMBL | UniProtAcc | Q09938 | |||||||
| UniProt_GCRP | UniProtAcc | Q09938 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 28 Jul 2004 11:19:58 | WBPerson1971 | Name_change | CGC_name | ptr-6 | ||||
| 3 | 28 Jul 2004 11:23:15 | WBPerson1971 | Event | Acquires_merge | WBGene00016908 | ||||
| Acquires_merge | WBGene00016908 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00037239 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00055418 | ||||||||
| 00055419 | |||||||||
| 00055420 | |||||||||
| 00055421 | |||||||||
| 00055422 | |||||||||
| 00055423 | |||||||||
| 00112511 | |||||||||
| Ortholog (33) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-6 encodes an ortholog of Drosophila and human PTCHD3, which definesone of seven paralogous families of sterol sensing domain (SSD)proteins; PTR-6 is weakly required for normal molting from L4 to adultstages; however, PTR-6 in conjunction with PTR-1 and PTR-10 is stronglyrequired for both molting and viability, with triple ptr-1/-6/-10 RNAianimals showing pronounced molting defects and lethality; PTR-6 is alsorequired for normal growth to full size and locomotion. | Paper_evidence | WBPaper00026841 | |||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Expressed in anterior hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54A12.1 | |||||||
| Corresponding_CDS_history | C54A12.1:wp151 | ||||||||
| Corresponding_transcript | C54A12.1.1 | ||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf717664 | ||||||||
| WBsf987828 | |||||||||
| WBsf987829 | |||||||||
| WBsf1012201 | |||||||||
| WBsf223023 | |||||||||
| WBsf223024 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00064393 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076914 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012369 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077030 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076946 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027238 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024900 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001883 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043106 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12711 | ||||||||
| Expr1025075 | |||||||||
| Expr1032077 | |||||||||
| Expr1147074 | |||||||||
| Expr2015173 | |||||||||
| Expr2033411 | |||||||||
| Drives_construct | WBCnstr00022511 | ||||||||
| WBCnstr00035628 | |||||||||
| Construct_product | WBCnstr00035628 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (182) | |||||||||
| Interaction (73) | |||||||||
| Map_info | Map | II | Position | -1.82888 | Error | 0.002744 | |||
| Positive | Positive_clone | C54A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024393 | ||||||||
| WBPaper00026841 | |||||||||
| WBPaper00031371 | |||||||||
| WBPaper00037313 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049182 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065377 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
