WormBase Tree Display for Sequence: C54A12
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| C54A12 | DNA | C54A12 | 37003 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00197741 | 15465 | 15535 | |
| WBGene00016911 | 30051 | 28342 | ||||
| WBGene00196761 | 8395 | 8539 | ||||
| WBGene00305109 | 19870 | 19585 | ||||
| WBGene00016909 | 13741 | 9126 | ||||
| WBGene00200325 | 31853 | 31764 | ||||
| WBGene00198270 | 31764 | 31853 | ||||
| WBGene00004221 | 5043 | 648 | ||||
| CDS_child (161) | ||||||
| Transcript | C54A12.5 | 8395 | 8539 | |||
| C54A12.6 | 15465 | 15535 | ||||
| C54A12.7 | 31764 | 31853 | ||||
| C54A12.8 | 31853 | 31764 | ||||
| C54A12.9 | 19870 | 19585 | ||||
| C54A12.1.1 | 5043 | 648 | ||||
| C54A12.2a.1 | 13735 | 11451 | ||||
| C54A12.2b.1 | 13735 | 9126 | ||||
| C54A12.2c.1 | 13741 | 9126 | ||||
| C54A12.4.1 | 30051 | 28342 | ||||
| PCR_product (12) | ||||||
| Allele (465) | ||||||
| Oligo_set | Aff_C54A12.2 | 12176 | 9659 | |||
| Aff_C54A12.3 | 19213 | 19526 | ||||
| Aff_C54A12.4 | 29699 | 28688 | ||||
| Aff_ZK622.3 | 37548 | 36630 | ||||
| Feature_object (138) | ||||||
| Feature_data | C54A12:Polysome | 1 | 37003 | |||
| C54A12:TranscriptionallyActiveRegion | 1 | 37003 | ||||
| C54A12:ChIPSeqTF | 1 | 37003 | ||||
| C54A12:TRF | 1 | 37003 | ||||
| C54A12:Dust | 1 | 37003 | ||||
| C54A12:inverted | 1 | 37003 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | ZK622 | 35004 | ||||
| Overlap_left | T16D1 | |||||
| Clone_left_end | C54A12 | 1 | ||||
| Clone_right_end | T16D1 | 33564 | ||||
| DB_info | Database | EMBL | NDB_AC | FO080943 | ||
| NDB_ID | _U28733 | |||||
| NDB_SV | FO080943.2 | |||||
| Secondary_accession | U28733 | |||||
| DB_remark | The 5' clone is T16D1, 6000 bp overlap; the 3' clone is ZK622, 2000 bp overlap. Actual start of this clone is at base position 1 of C54A12; actual end is at 5395 of ZK622. | |||||
| [121025] Sequence correction WBsf268457 : Insertion C1 bases from @ 6591 | ||||||
| [121025] Sequence correction WBsf267994 : Insertion T1 bases from @ 17044 | ||||||
| [121025] Sequence correction WBsf268028 : Insertion T1 bases from @ 27051 | ||||||
| [121025] Sequence correction WBsf268520 : Insertion T1 bases from @ 27094 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Bentley D | ||||
| From_laboratory | RW | |||||
| Date | 02 Dec 1994 00:00:00 | |||||
| Species | Caenorhabditis elegans | |||||
| Visible | Clone | C54A12 | ||||
| Remark | [20100424 wnash] added 1 bp (g) at position 29689 (between GACGCCTCGC and TACTTTGCTT) | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 5f09e9b017ac2c534433305ef3c242a2 | ||||
| Status | Finished | |||||
| Submitted | 02 Dec 1994 00:00:00 | |||||
| Map | Sequence-II | |||||
| Interpolated_map_position | II | -1.82396 | ||||
| Method | Genomic_canonical |
