WormBase Tree Display for Gene: WBGene00004221
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WBGene00004221 | SMap | S_parent | Sequence | C54A12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | ptr-6 | Person_evidence | WBPerson349 | |||
Sequence_name | C54A12.1 | ||||||
Molecular_name | C54A12.1 | ||||||
C54A12.1.1 | |||||||
CE39341 | |||||||
Other_name | CELE_C54A12.1 | Accession_evidence | NDB | BX284602 | |||
Public_name | ptr-6 | ||||||
DB_info | Database | AceView | gene | 2F534 | |||
WormQTL | gene | WBGene00004221 | |||||
WormFlux | gene | WBGene00004221 | |||||
NDB | locus_tag | CELE_C54A12.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00004221|UniProtKB=Q09938 | |||||
family | PTHR10796 | ||||||
NCBI | gene | 173898 | |||||
RefSeq | protein | NM_062585.6 | |||||
TREEFAM | TREEFAM_ID | TF331806 | |||||
TrEMBL | UniProtAcc | Q09938 | |||||
UniProt_GCRP | UniProtAcc | Q09938 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Acquires_merge | WBGene00016908 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ptr | ||||||
Allele (48) | |||||||
Strain | WBStrain00037239 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00055418 | ||||||
00055419 | |||||||
00055420 | |||||||
00055421 | |||||||
00055422 | |||||||
00055423 | |||||||
00112511 | |||||||
Ortholog (33) | |||||||
Paralog (30) | |||||||
Structured_description | Concise_description | ptr-6 encodes an ortholog of Drosophila and human PTCHD3, which definesone of seven paralogous families of sterol sensing domain (SSD)proteins; PTR-6 is weakly required for normal molting from L4 to adultstages; however, PTR-6 in conjunction with PTR-1 and PTR-10 is stronglyrequired for both molting and viability, with triple ptr-1/-6/-10 RNAianimals showing pronounced molting defects and lethality; PTR-6 is alsorequired for normal growth to full size and locomotion. | Paper_evidence | WBPaper00026841 | |||
WBPaper00027263 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 08 Nov 2006 00:00:00 | ||||||
Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Expressed in anterior hypodermis. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C54A12.1 | |||||
Corresponding_CDS_history | C54A12.1:wp151 | ||||||
Corresponding_transcript | C54A12.1.1 | ||||||
Other_sequence (21) | |||||||
Associated_feature | WBsf717664 | ||||||
WBsf987828 | |||||||
WBsf987829 | |||||||
WBsf1012201 | |||||||
WBsf223023 | |||||||
WBsf223024 | |||||||
Experimental_info | RNAi_result | WBRNAi00064393 | Inferred_automatically | RNAi_primary | |||
WBRNAi00076914 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012369 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00077030 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076946 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027238 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024900 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001883 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043106 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12711 | ||||||
Expr1025075 | |||||||
Expr1032077 | |||||||
Expr1147074 | |||||||
Expr2015173 | |||||||
Expr2033411 | |||||||
Drives_construct | WBCnstr00022511 | ||||||
WBCnstr00035628 | |||||||
Construct_product | WBCnstr00035628 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (182) | |||||||
Interaction (73) | |||||||
Map_info | Map | II | Position | -1.82888 | Error | 0.002744 | |
Positive | Positive_clone | C54A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00024393 | ||||||
WBPaper00026841 | |||||||
WBPaper00031371 | |||||||
WBPaper00037313 | |||||||
WBPaper00038491 | |||||||
WBPaper00049182 | |||||||
WBPaper00055090 | |||||||
WBPaper00065377 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |