WormBase Tree Display for Gene: WBGene00000701

WBGene00000701 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F54D1
  Identity: Version: 1
    Name: CGC_name: col-127 Person_evidence: WBPerson345
      Sequence_name: F54D1.3
      Molecular_name: F54D1.3
        F54D1.3.1
        CE05937
      Other_name: CELE_F54D1.3 Accession_evidence: NDB BX284604
      Public_name: col-127
    DB_info: Database: AceView gene 4M30
        WormQTL gene WBGene00000701
        WormFlux gene WBGene00000701
        NDB locus_tag CELE_F54D1.3
        NCBI gene 186228
        RefSeq protein NM_069715.3
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc G5EFU8
        UniProt_GCRP UniProtAcc G5EFU8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele: WBVar01500079
      WBVar01498996
      WBVar01581774
      WBVar01499925
      WBVar01499585
      WBVar01499586
      WBVar02037168
      WBVar01500245
    RNASeq_FPKM (74)
    GO_annotation: 00107693
    Ortholog (55)
    Paralog: WBGene00000596 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000599 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00000616 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000628 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000632 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000637 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000638 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000639 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000641 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000656 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000664 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00000666 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000676 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000677 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000681 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000700 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000749 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000722 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000723 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000721 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000704 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000717 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00000718 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00000719 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000714 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000716 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000720 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000734 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000729 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000735 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000715 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00000612 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000624 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000627 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000661 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000757 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000760 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001067 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00005016 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54D1.3
    Corresponding_CDS_history: F54D1.3:wp228
    Corresponding_transcript: F54D1.3.1
    Other_sequence (79)
    Associated_feature: WBsf230851
  Experimental_info: RNAi_result: WBRNAi00048279 Inferred_automatically: RNAi_primary
      WBRNAi00015595 Inferred_automatically: RNAi_primary
      WBRNAi00048280 Inferred_automatically: RNAi_primary
    Expr_pattern (3)
    Drives_construct: WBCnstr00037356
    Construct_product: WBCnstr00037356
    Microarray_results: SMD_F54D1.3
      SMD_F54D1.4:2
      172794_x_at
      189978_s_at
      Aff_F54D1.2
    Expression_cluster (86)
    Interaction (90)
  Map_info: Map: IV Position: 4.93428
    Positive: Positive_clone: F54D1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059172
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene