WormBase Tree Display for Gene: WBGene00000661
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| WBGene00000661 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | Y81G3A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-86 | Person_evidence | WBPerson345 | |||||
| Sequence_name | Y81G3A.5 | ||||||||
| Molecular_name | Y81G3A.5a | ||||||||
| Y81G3A.5a.1 | |||||||||
| CE23120 | |||||||||
| Y81G3A.5b | |||||||||
| CE43199 | |||||||||
| Y81G3A.5b.1 | |||||||||
| Other_name | CELE_Y81G3A.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-86 | ||||||||
| DB_info | Database | AceView | gene | 2N384 | |||||
| WormQTL | gene | WBGene00000661 | |||||||
| WormFlux | gene | WBGene00000661 | |||||||
| NDB | locus_tag | CELE_Y81G3A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000661|UniProtKB=Q9XVY1 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 190749 | |||||||
| RefSeq | protein | NM_001267446.1 | |||||||
| NM_001267445.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF319043 | |||||||
| TrEMBL | UniProtAcc | Q9XVY1 | |||||||
| B6GUQ3 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XVY1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (84) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006276 | ||||||||
| 00102935 | |||||||||
| 00102936 | |||||||||
| 00107657 | |||||||||
| Ortholog | WBGene00053651 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00025774 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00139047 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WBGene00134605 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WBGene00126988 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| WBGene00222371 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g6317 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00280007 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Paralog (26) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y81G3A.5a | |||||||
| Y81G3A.5b | |||||||||
| Corresponding_transcript | Y81G3A.5a.1 | ||||||||
| Y81G3A.5b.1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058563 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037898 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021525 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023952 | ||||||||
| Expr1161970 | |||||||||
| Expr2010432 | |||||||||
| Expr2028672 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (34) | |||||||||
| Map_info | Map | II | Position | 14.2098 | Error | 0.049417 | |||
| Positive | Positive_clone | Y81G3A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
