WormBase Tree Display for Gene: WBGene00000624
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| WBGene00000624 | Evidence | Person_evidence | WBPerson345 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | ||||||||||
| SMap | S_parent | Sequence | Y18H1A | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | col-47 | Person_evidence | WBPerson345 | ||||||
| Sequence_name | Y18H1A.12 | |||||||||
| Molecular_name | Y18H1A.12a | |||||||||
| Y18H1A.12a.1 | ||||||||||
| CE49142 | ||||||||||
| Y18H1A.12b | ||||||||||
| CE49234 | ||||||||||
| Y18H1A.12b.1 | ||||||||||
| Other_name | CELE_Y18H1A.12 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | col-47 | |||||||||
| DB_info | Database | AceView | gene | 1B221 | ||||||
| WormFlux | gene | WBGene00000624 | ||||||||
| NDB | locus_tag | CELE_Y18H1A.12 | ||||||||
| Panther | gene | CAEEL|WormBase=WBGene00000624|UniProtKB=V6CLE3 | ||||||||
| family | PTHR24637 | |||||||||
| NCBI | gene | 4363004 | ||||||||
| RefSeq | protein | NM_001306253.3 | ||||||||
| NM_001306252.2 | ||||||||||
| TrEMBL | UniProtAcc | V6CLE3 | ||||||||
| V6CLD0 | ||||||||||
| UniProt_GCRP | UniProtAcc | V6CLE3 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 31 May 2006 08:42:00 | WBPerson1867 | Event | Changed_class | Pseudogene | CDS | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Gene_class | col | |||||||||
| Allele (61) | ||||||||||
| Strain | WBStrain00047618 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| GO_annotation | 00105361 | |||||||||
| 00105362 | ||||||||||
| Ortholog (16) | ||||||||||
| Paralog (16) | ||||||||||
| Structured_description | Concise_description | col-47 encodes a cuticle collagen. | Curator_confirmed | WBPerson1843 | ||||||
| Date_last_updated | 03 Apr 2007 00:00:00 | |||||||||
| Automated_description | Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | Y18H1A.12a | ||||||||
| Y18H1A.12b | ||||||||||
| Corresponding_CDS_history | Y18H1A.12:wp205 | |||||||||
| Y18H1A.12:wp240 | ||||||||||
| Corresponding_transcript | Y18H1A.12a.1 | |||||||||
| Y18H1A.12b.1 | ||||||||||
| Corresponding_pseudogene_history | Y18H1A.12:wp159 | |||||||||
| Experimental_info | Expr_pattern | Expr1015626 | ||||||||
| Expr1030367 | ||||||||||
| Expr1159137 | ||||||||||
| Expr2010400 | ||||||||||
| Expr2028642 | ||||||||||
| Microarray_results | SMD_Y18H1A_67.H | |||||||||
| Aff_Y18H1A_67.H | ||||||||||
| GPL13394_WBGene00000624 | ||||||||||
| GPL13914_Y18H1A.12 | ||||||||||
| GPL14144_Y18H1A.12_676-735_0.957_1_A | ||||||||||
| GPL19516_CGZ0043421 | ||||||||||
| GPL21109_Y18H1A.12 | ||||||||||
| GPL8304_CE_WBGene00000624_A | ||||||||||
| GPL8673_Y18H1A_12P00272 | ||||||||||
| GPL8673_Y18H1A_12P00481 | ||||||||||
| Expression_cluster (91) | ||||||||||
| Map_info | Map | I | Position | -18.377 | Error | 0.036372 | ||||
| Positive | Positive_clone | Y18H1A | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
