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WormBase Tree Display for Gene: WBGene00003386

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Name Class

WBGene00003386EvidencePaper_evidenceWBPaper00004415
SMapS_parentSequenceK06C4
IdentityVersion1
NameCGC_namemod-1Person_evidenceWBPerson268
Sequence_nameK06C4.6
Molecular_nameK06C4.6a
K06C4.6a.1
CE28590
K06C4.6b
CE30814
K06C4.6c
CE38391
K06C4.6b.1
K06C4.6c.1
Other_nameCELE_K06C4.6Accession_evidenceNDBBX284605
Public_namemod-1
DB_infoDatabaseAceViewgene5J390
WormQTLgeneWBGene00003386
WormFluxgeneWBGene00003386
NDBlocus_tagCELE_K06C4.6
PanthergeneCAEEL|WormBase=WBGene00003386|UniProtKB=Q9GQ00
familyPTHR18945
NCBIgene179269
RefSeqproteinNM_001028863.5
NM_171495.6
NM_001028864.4
SwissProtUniProtAccQ9GQ00
TREEFAMTREEFAM_IDTF315490
UniProt_GCRPUniProtAccQ9GQ00
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmod
Allele (72)
Legacy_information[Ranganathan R] modulation of locomotion defective. Resistant to effects of serotonin on locomotion.
StrainWBStrain00027365
WBStrain00055584
WBStrain00055581
WBStrain00055576
WBStrain00055575
WBStrain00055061
WBStrain00055570
WBStrain00055580
WBStrain00055579
RNASeq_FPKM (74)
GO_annotation00092179
00092180
00092181
00092182
00092183
00092184
00092185
00092186
00092187
00092188
00092189
00092190
00092191
00092192
00092193
00092194
00092195
00092196
00092197
00092198
00092199
00092200
00092201
00092202
00092203
00092204
00092205
00092206
00092207
00092208
00092209
00110815
00110816
00110817
00110818
00110819
00110820
Ortholog (29)
ParalogWBGene00000042Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000043Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000044Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000045Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000046Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000047Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000048Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000049Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000050Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000051Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000053Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000054Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000055Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000056Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000057Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000058Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000059Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000060Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000061Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000062Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000232Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000233Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000845Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000951Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000955Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001133Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001373Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001512Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001586Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001587Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001588Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001591Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001592Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001593Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002974Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002975Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006784Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006765Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006774Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006797Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008280Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009799Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010275Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010741Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018880Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008022Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008551Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008997Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011354Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011355Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011356Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011358Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011359Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011360Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012857Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013300Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013338Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013534Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013655Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013914Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015412Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017314Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017375Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017389Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017543Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017544Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017580Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019069Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020048Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020236Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020767Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021437Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022247Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00043066Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020836Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022106Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013746Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021981Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010994Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007903Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007191Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022283Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00045385Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00044301Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020528Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013517Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021146Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008223Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020657Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008076Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009790Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020605Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017399Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020569Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012099Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012915Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017483Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044528Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionmod-1 encodes a serotonin-gated chloride channel; contrary to published literature, MOD-1 activity is NOT required for the enhanced slowing response exhibited by food-deprived animals upon encountering a bacterial food source; subsequent studies have shown that mod-1 mutants (n3034, ok103, nr2043) do not exhibit reduced enhanced slowing and that the behavioral defect of the original isolate and mod-1 chloride channel mutation (n3034) are genetically separable; when expressed in voltage-clamped Xenopus oocytes, MOD-1 is able to form a serotonin-gated ion channel, and when expressed in human tissue culture cells, MOD-1 exhibits behavior consistent with chloride selectivity; a rescuing MOD-1::GFP construct is expressed in the cell bodies and axons (the latter presumably due to overexpression) of neurons in the head, tail, and ventral nerve cord.Paper_evidenceWBPaper00004415
Person_evidenceWBPerson461
Curator_confirmedWBPerson1843
Date_last_updated07 Oct 2009 00:00:00
Automated_descriptionEnables serotonin binding activity and serotonin-gated chloride channel activity. Involved in several processes, including behavioral response to starvation; locomotory exploration behavior; and positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway. Located in neuronal cell body and plasma membrane. Expressed in body wall musculature and neurons. Used to study cocaine abuse.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:809Homo sapiensPaper_evidenceWBPaper00034643
Curator_confirmedWBPerson324
Date_last_updated28 May 2019 00:00:00
Models_disease_assertedWBDOannot00000683
Molecular_infoCorresponding_CDSK06C4.6a
K06C4.6b
K06C4.6c
Corresponding_transcriptK06C4.6a.1
K06C4.6b.1
K06C4.6c.1
Other_sequenceJI466929.1
JI169197.1
JI478000.1
JI468889.1
Associated_featureWBsf669190
WBsf1000785
WBsf1000786
WBsf1020115
WBsf1020116
WBsf234154
WBsf234155
WBsf234156
WBsf234157
Experimental_infoRNAi_resultWBRNAi00034017Inferred_automaticallyRNAi_primary
WBRNAi00050055Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00007179
WBCnstr00010036
WBCnstr00015006
WBCnstr00015042
WBCnstr00015423
WBCnstr00015424
WBCnstr00018067
WBCnstr00018489
WBCnstr00020388
WBCnstr00036146
Construct_productWBCnstr00007179
WBCnstr00007180
WBCnstr00015422
WBCnstr00020388
WBCnstr00036146
Microarray_results (28)
Expression_cluster (131)
InteractionWBInteraction000001399
WBInteraction000031265
WBInteraction000166111
WBInteraction000520738
WBInteraction000525285
Map_infoMapVPosition1.72643Error0.025158
Well_ordered
PositivePositive_cloneC38E12
K06C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeNegative_cloneC31A10
Mapping_dataMulti_point3874
3875
3876
3877
3878
3880
3881
3882
3883
Reference (108)
RemarkPositive clone C38E12 is based on stable transformation rescue [030407 ck1]Person_evidenceWBPerson1388
Negative clone C31A10 is based on failure to rescue [030407 ck1]Person_evidenceWBPerson1388
This mod-1 (cgc4415) is different from the mod-1 published in cgc3363, which is now dmo-1Paper_evidenceWBPaper00004415
WBPaper00003363
MethodGene