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WormBase Tree Display for Gene: WBGene00000397

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Name Class

WBGene00000397SMapS_parentSequenceF08B4
IdentityVersion2
NameCGC_namecdh-5Person_evidenceWBPerson698
Sequence_nameF08B4.2
Molecular_name (12)
Other_nameCELE_F08B4.2Accession_evidenceNDBBX284604
Public_namecdh-5
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
226 Feb 2014 16:35:28WBPerson4025EventSplit_intoWBGene00255375
Split_intoWBGene00255375
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdh
Allele (82)
StrainWBStrain00032300
WBStrain00000426
RNASeq_FPKM (74)
GO_annotation00022207
00022208
00022209
00022210
00107328
00107329
00107330
Ortholog (44)
ParalogWBGene00000399Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019994Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000395Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000401Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000402Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022103Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptiona homolog of cadherin.Paper_evidenceWBPaper00004508
Curator_confirmedWBPerson480
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Is an ortholog of human PCDH15 (protocadherin related 15).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110832Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14674)
DOID:0110831Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14674)
DOID:0110481Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:14674)
Molecular_infoCorresponding_CDSF08B4.2a
F08B4.2b
F08B4.2c
F08B4.2d
Corresponding_CDS_historyF08B4.2a:wp242
F08B4.2a:wp261
F08B4.2c:wp261
Corresponding_transcriptF08B4.2a.1
F08B4.2b.1
F08B4.2c.1
F08B4.2d.1
Other_sequenceJI465114.1
JI165597.1
JI472854.1
JI478310.1
BMC06462_1
Associated_featureWBsf997263
WBsf1017874
WBsf228725
WBsf228726
Experimental_infoRNAi_resultWBRNAi00012865Inferred_automaticallyRNAi_primary
WBRNAi00043966Inferred_automaticallyRNAi_primary
WBRNAi00000523Inferred_automaticallyRNAi_primary
Expr_patternExpr1012101
Expr1030218
Expr1147941
Expr2009803
Expr2028043
Drives_constructWBCnstr00037570
Construct_productWBCnstr00037570
Microarray_results (18)
Expression_clusterWBPaper00005700:transmembrane_protein
WBPaper00024505:pharyngeal_enriched
WBPaper00027339:daf-12(rh273)_upregulated
WBPaper00029047:atx-3_upregulated
WBPaper00033065:clk-1(qm30)_upregulated
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00041071:spe-44_upregulated
WBPaper00041954:ethanol_upregulated
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00043945:MeHg_downregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044753:ahr-1_downregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Spermatogenic
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00047132:skn-1(RNAi)_downregulated
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00050094:mes-2(bn11)_upregulated
WBPaper00050094:mes-6(bn66)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050231:male_enriched
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:body-muscle_enriched
WBPaper00050990:body-muscle_expressed
WBPaper00051265:F1_morc-1(tm6048)_upregulated
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00053771:down_by_skn-1(RNAi)
WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00054410:set-9(rw5)_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056039:ptrn-1(tm5597)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:Cry5B_upregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L3
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057154:HeatShock_downregulated_miRNA-target
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060764:swsn-9(ok1354)_upregulated
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00060951:mrpl-2(osa3)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Anterior_arcade_cell
WBPaper00061340:mc1
WBPaper00061340:mc2
WBPaper00061340:mc3
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061340:pm1_pm2
WBPaper00061340:pm3_pm4_pm5
WBPaper00061340:pm6
WBPaper00061340:pm7
WBPaper00061340:pm8
WBPaper00061340:Posterior_arcade_cell
WBPaper00061340:Rectal_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:bus-8_3160-K04H4.2_2324
WBPaper00061527:F07A5.2-R10E9.2
WBPaper00061952:daf-18(nr2037)_upregulated
WBPaper00062118:neural-HSF-1_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062344:grh-1(overexpression)_upregulated
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062440:crh-1(syb385)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062534:fat-P-80_downregulated
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064532:pals-25(icb98)_downregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065005:sams-4(RNAi)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066038:mip-1(how5)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_2_1
cgc4489_group_22
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_E
WBPaper00026980:intestine_enriched
WBPaper00027111:eri-1(mg366)_downregulated
WBPaper00027342:alpha-Synuclein(A53T)_upregulated
WBPaper00027342:alpha-Synuclein(WT)_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032948:FedUp
WBPaper00033101:spr-5_regulated
WBPaper00034739:N2lessDR1350
WBPaper00034739:RIL17lessRIL14
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036130:mir-243_up_regulated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00038172:crh-1null_down_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00040963:Q50_up
WBPaper00040963:Q100_down
WBPaper00040963:Q100_up
WBPaper00040963:Q200_down
WBPaper00040963:Q200_up
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045374:Benzene_downregulated
WBPaper00045673:colistin_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
InteractionWBInteraction000151546
WBInteraction000170462
WBInteraction000275574
WBInteraction000368444
WBInteraction000399737
Map_infoMapIVPosition3.92961Error0.000991
PositivePositive_cloneF08B4Inferred_automatically (2)
Mapping_dataMulti_point4874
Pseudo_map_position
ReferenceWBPaper00004508
WBPaper00013424
WBPaper00027233
WBPaper00032446
WBPaper00038491
WBPaper00055090
WBPaper00058371
WBPaper00058555
WBPaper00064495
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene