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WormBase Tree Display for Gene: WBGene00004275

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Name Class

WBGene00004275SMapS_parentSequenceW04G5
IdentityVersion2
NameCGC_namerab-11.2Person_evidenceWBPerson451
Sequence_nameW04G5.2
Molecular_nameW04G5.2a
W04G5.2a.1
CE40145
W04G5.2b
W04G5.2c
Other_nameCELE_W04G5.2Accession_evidenceNDBBX284601
Public_namerab-11.2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
213 Mar 2006 15:58:20WBPerson1983EventChanged_classPseudogeneCDS
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrab
Allele (79)
RNASeq_FPKM (74)
GO_annotation (8)
Ortholog (67)
ParalogWBGene00000089Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004266Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004267Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004268Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004269Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004270Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004271Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004272Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004273Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004274Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004283Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004279Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006833Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004276Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004281Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004282Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004284Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004278Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016344Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004277Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004286Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011083Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013790Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004285Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022123Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007067Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016874Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019317Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008672Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008671Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016970Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022177Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be located in Golgi apparatus and recycling endosome. Is an ortholog of human RAB11A (RAB11A, member RAS oncogene family).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW04G5.2a
Corresponding_CDS_historyW04G5.2a:wp120
Corresponding_transcriptW04G5.2b
W04G5.2c
W04G5.2a.1
Corresponding_transcript_historyW04G5.2b:wp120
Corresponding_pseudogene_historyW04G5.2:wp156
Experimental_infoRNAi_resultWBRNAi00054790Inferred_automaticallyRNAi_primary
WBRNAi00026491Inferred_automaticallyRNAi_primary
WBRNAi00081669Inferred_automaticallyRNAi_primary
WBRNAi00036284Inferred_automaticallyRNAi_primary
WBRNAi00026490Inferred_automaticallyRNAi_primary
WBRNAi00004425Inferred_automaticallyRNAi_primary
Expr_patternExpr1026496
Expr1158331
Expr2015215
Expr2033449
Drives_constructWBCnstr00035594
Construct_productWBCnstr00019197
WBCnstr00019584
WBCnstr00021418
WBCnstr00035594
Microarray_results (21)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048923:Aging_regulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050514:CEBP-1_interacting
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:NMDA-neuron_enriched
WBPaper00050990:NMDA-neuron_expressed
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055226:adr-1(tm668)_upregulated
WBPaper00055354:Allantoin_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:Cry5B_downregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058969:RIS_depleted
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061340:ALA
WBPaper00061340:Neuroblast_ALA_RMED
WBPaper00061340:Parent_of_tail_spike_and_hyp10
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_upregulated_OP50
WBPaper00061527:C17H1.6-C17H1.13
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064509:static-magnetic-field_downregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:5_0
WBPaper00065841:92_0
WBPaper00065841:110_1
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:rde-3(ne298)_upregulated
WBPaper00027111:rde-3(r459)_upregulated
WBPaper00027111:rrf-1(pk1417)_upregulated
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00032948:FedUp
WBPaper00035227:heat_shock_regulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00046083:pmk-1(km25)_OP50_upregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00051387:Triclosan_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
Map_infoMapIPosition9.37179Error0.040082
PositivePositive_cloneW04G5Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point5610
4460
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene