WormBase Tree Display for Gene: WBGene00004269
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| WBGene00004269 | SMap | S_parent | Sequence | F59B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rab-6.1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | F59B2.7 | ||||||||
| Molecular_name | F59B2.7 | ||||||||
| F59B2.7.1 | |||||||||
| CE00234 | |||||||||
| Other_name | P34213 | Paper_evidence | WBPaper00041995 | ||||||
| CELE_F59B2.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | rab-6.1 | ||||||||
| DB_info | Database | AceView | gene | 3K94 | |||||
| WormQTL | gene | WBGene00004269 | |||||||
| WormFlux | gene | WBGene00004269 | |||||||
| NDB | locus_tag | CELE_F59B2.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004269|UniProtKB=P34213 | |||||||
| family | PTHR24073 | ||||||||
| NCBI | gene | 176275 | |||||||
| RefSeq | protein | NM_066592.7 | |||||||
| SwissProt | UniProtAcc | P34213 | |||||||
| TREEFAM | TREEFAM_ID | TF300803 | |||||||
| UniProt_GCRP | UniProtAcc | P34213 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rab | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | rab-6.1 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila and mammalian Rab6 GTPases; by homology, RAB-6.1 is predicted to function in the regulation of intracellular membrane trafficking; RNAi experiments indicate that rab-6.1 is required redundantly with rab-6.2 for normal embryonic development and reproduction; a RAB-6.1::GFP fusion protein localizes to the Golgi cisternae; RAB-6.1 physically interacts with VPS-52, a GARP (Golgi associated retrograde protein) complex subunit, in vivo. | Paper_evidence | WBPaper00030808 | |||||
| WBPaper00038455 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Jan 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTPase activity. Involved in cortical granule exocytosis and cuticle development. Located in Golgi cisterna and cortical granule. Expressed in several structures, including RIG; command interneuron; gonad; intestine; and vulva. Is an ortholog of human RAB6A (RAB6A, member RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59B2.7 | |||||||
| Corresponding_transcript | F59B2.7.1 | ||||||||
| Other_sequence | EL888321.1 | ||||||||
| XIC03786_1 | |||||||||
| Tcir_isotig14388 | |||||||||
| JI172655.1 | |||||||||
| PPC17073_1 | |||||||||
| CBC04025_1 | |||||||||
| XI03944 | |||||||||
| Associated_feature | WBsf227222 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr9 | ||||||||
| Expr10203 | |||||||||
| Expr12748 | |||||||||
| Expr1017645 | |||||||||
| Expr1032108 | |||||||||
| Expr1152894 | |||||||||
| Expr2015229 | |||||||||
| Expr2033463 | |||||||||
| Drives_construct | WBCnstr00015513 | ||||||||
| WBCnstr00022749 | |||||||||
| WBCnstr00035598 | |||||||||
| Construct_product | WBCnstr00015122 | ||||||||
| WBCnstr00015123 | |||||||||
| WBCnstr00015513 | |||||||||
| WBCnstr00022747 | |||||||||
| WBCnstr00022748 | |||||||||
| WBCnstr00022749 | |||||||||
| WBCnstr00035598 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction (102) | |||||||||
| Map_info | Map | III | Position | 0.082312 | Error | 0.009627 | |||
| Positive | Positive_clone | F59B2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5517 | |||||||
| 4764 | |||||||||
| 4799 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
