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WormBase Tree Display for Gene: WBGene00018643

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Name Class

WBGene00018643SMapS_parentSequenceF49F1
IdentityVersion2
NameCGC_namedrd-50Person_evidenceWBPerson10050
Sequence_nameF49F1.1
Molecular_nameF49F1.1
F49F1.1.1
CE17084
Other_nameCELE_F49F1.1Accession_evidenceNDBBX284604
Public_namedrd-50
DB_infoDatabaseAceViewgene4E883
WormQTLgeneWBGene00018643
WormFluxgeneWBGene00018643
NDBlocus_tagCELE_F49F1.1
PanthergeneCAEEL|WormBase=WBGene00018643|UniProtKB=Q9GZE5
familyPTHR21724
NCBIgene177176
RefSeqproteinNM_068084.5
TREEFAMTREEFAM_IDTF317956
TrEMBLUniProtAccQ9GZE5
UniProt_GCRPUniProtAccQ9GZE5
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
229 Apr 2015 12:07:40WBPerson2970Name_changeCGC_namedrd-50
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdrd
Allele (50)
RNASeq_FPKM (74)
GO_annotation00093042
00093043
00093044
Ortholog (32)
ParalogWBGene00008893Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009151Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009152Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009417Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009419Caenorhabditis elegansFrom_analysisTreeFam
WBGene00009420Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009421Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009422Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009423Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009424Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00009756Caenorhabditis elegansFrom_analysisTreeFam
WBGene00011521Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013935Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013937Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013939Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013941Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013943Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00015398Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00016781Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00017200Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00017203Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00017204Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018646Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00020242Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018645Caenorhabditis elegansFrom_analysisTreeFam
WBGene00020237Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020239Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020243Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020244Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00021612Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00018647Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00020238Caenorhabditis elegansFrom_analysisTreeFam
WBGene00020241Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020240Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00045497Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00008483Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008492Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008493Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008494Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008495Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008841Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009418Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010940Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012044Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012727Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012729Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00014037Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00014057Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015756Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015759Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016731Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016732Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016733Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016782Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018303Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018616Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018618Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018619Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018713Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044147Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044315Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044316Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044317Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-positive bacterium and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49F1.1
Corresponding_transcriptF49F1.1.1
Other_sequenceNBC01774_1
NB08687
Associated_featureWBsf645906
WBsf996181
WBsf228156
WBsf228157
Experimental_infoRNAi_resultWBRNAi00078259Inferred_automaticallyRNAi_primary
WBRNAi00015337Inferred_automaticallyRNAi_primary
WBRNAi00047876Inferred_automaticallyRNAi_primary
WBRNAi00032555Inferred_automaticallyRNAi_primary
WBRNAi00001965Inferred_automaticallyRNAi_primary
WBRNAi00095432Inferred_automaticallyRNAi_primary
WBRNAi00095424Inferred_automaticallyRNAi_primary
WBRNAi00095411Inferred_automaticallyRNAi_primary
Expr_patternExpr1022463
Expr1151705
Expr2011085
Expr2029321
Drives_constructWBCnstr00026364
Construct_productWBCnstr00026364
Microarray_results (19)
Expression_cluster (260)
InteractionWBInteraction000236426
WBInteraction000292066
WBInteraction000317892
WBInteraction000402983
WBInteraction000455812
WBInteraction000457799
Map_infoMapIVPosition-0.675337
PositivePositive_cloneF49F1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027722
WBPaper00028482
WBPaper00032370
WBPaper00044557
WBPaper00058665
WBPaper00062322
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene