WormBase Tree Display for Gene: WBGene00012729
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| WBGene00012729 | SMap | S_parent | Sequence | Y39G8B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | Y39G8B.10 | |||||||
| Molecular_name | Y39G8B.10 | ||||||||
| Y39G8B.10.1 | |||||||||
| CE46239 | |||||||||
| Other_name | CELE_Y39G8B.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | Y39G8B.10 | ||||||||
| DB_info | Database | AceView | gene | 2O270 | |||||
| WormQTL | gene | WBGene00012729 | |||||||
| WormFlux | gene | WBGene00012729 | |||||||
| NDB | locus_tag | CELE_Y39G8B.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012729|UniProtKB=Q7YWR4 | |||||||
| family | PTHR21724 | ||||||||
| NCBI | gene | 3565251 | |||||||
| RefSeq | protein | NM_001027260.3 | |||||||
| TREEFAM | TREEFAM_ID | TF318899 | |||||||
| TrEMBL | UniProtAcc | Q7YWR4 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YWR4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Mar 2018 11:09:16 | WBPerson4025 | Event | Split_into | WBGene00303087 | ||||
| Split_into | WBGene00303087 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (49) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00057638 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00145140 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| CSP28.g1343 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g13657 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP32.g2232 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| Cni-Y39G8B.10 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold630.g19487 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| GCK72_005755 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g6458 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00092346 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Paralog (61) | |||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell and intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; microarray; and RNA-seq studies. Is affected by four chemicals including multi-walled carbon nanotube; Rifampin; and allantoin based on RNA-seq studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39G8B.10 | |||||||
| Corresponding_CDS_history | Y39G8B.10:wp227 | ||||||||
| Y39G8B.10a:wp264 | |||||||||
| Y39G8B.10b:wp264 | |||||||||
| Corresponding_transcript | Y39G8B.10.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf650728 | ||||||||
| WBsf990573 | |||||||||
| WBsf1013737 | |||||||||
| WBsf224231 | |||||||||
| WBsf224232 | |||||||||
| Experimental_info | Expr_pattern | Expr1010181 | |||||||
| Expr1159767 | |||||||||
| Expr2007399 | |||||||||
| Expr2025634 | |||||||||
| Microarray_results | A_12_P114324 | ||||||||
| Aff_Y39G8B.A | |||||||||
| GPL13394_WBGene00012729 | |||||||||
| GPL13914_Y39G8B.10 | |||||||||
| GPL14144_Y39G8B.10_455-514_0.970_1_A | |||||||||
| GPL19516_CGZ0045006 | |||||||||
| GPL21109_Y39G8B.10 | |||||||||
| GPL8304_CE_WBGene00012729_A | |||||||||
| GPL8673_Y39G8B_10P00032 | |||||||||
| GPL8673_Y39G8B_10P00450 | |||||||||
| Expression_cluster (84) | |||||||||
| Map_info | Positive | Positive_clone | Y39G8B | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 21.8219 | |||||||
| Method | Gene |
