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WormBase Tree Display for Gene: WBGene00008477

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Name Class

WBGene00008477SMapS_parentSequenceE03H4
IdentityVersion2
NameCGC_nameclec-17Person_evidenceWBPerson655
Sequence_nameE03H4.10
Molecular_nameE03H4.10
E03H4.10.1
CE20647
Other_nameCELE_E03H4.10Accession_evidenceNDBBX284601
Public_nameclec-17
DB_infoDatabaseAceViewgene1N22
WormQTLgeneWBGene00008477
WormFluxgeneWBGene00008477
NDBlocus_tagCELE_E03H4.10
PanthergeneCAEEL|WormBase=WBGene00008477|UniProtKB=O17741
familyPTHR22991
NCBIgene173111
RefSeqproteinNM_060751.6
TREEFAMTREEFAM_IDTF351663
TrEMBLUniProtAccO17741
UniProt_GCRPUniProtAccO17741
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
229 Apr 2005 13:53:45WBPerson2970Name_changeCGC_nameclec-17
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (30)
RNASeq_FPKM (74)
Ortholog (50)
ParalogWBGene00007153Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008294Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020220Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00015198Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00017364Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00018105Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00010399Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011584Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00009854Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00010169Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012023Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012025Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012103Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00008891Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020328Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012582Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016577Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016450Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012583Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016451Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00013493Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020327Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013607Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009856Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009855Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009857Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009859Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012022Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044331Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044332Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009860Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011852Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013608Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013609Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012024Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019928Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00019917Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011853Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015403Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00219321Caenorhabditis elegansFrom_analysisPanther
WBGene00007152Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008593Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008594Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008595Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008596Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008597Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008879Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009291Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011222Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017199Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020221Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in head mesodermal cell; intestine; male-specific anatomical entity; mechanosensory neurons; and pharyngeal muscle cell based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty-six chemicals including Heme; hydrogen sulfide; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSE03H4.10
Corresponding_transcriptE03H4.10.1
Associated_featureWBsf649663
WBsf665023
WBsf985560
WBsf220429
Experimental_infoRNAi_result (4)
Expr_patternExpr1016074
Expr1033688
Expr1147634
Expr2010098
Expr2028341
Drives_constructWBCnstr00032940
Construct_productWBCnstr00032940
Microarray_results (16)
Expression_cluster (311)
Interaction (13)
Map_infoMapIPosition13.1994Error0.001498
PositivePositive_cloneE03H4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027722
WBPaper00031686
WBPaper00033987
WBPaper00037524
WBPaper00038491
WBPaper00039120
WBPaper00055090
WBPaper00059843
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene