WormBase Tree Display for Gene: WBGene00020328
expand all nodes | collapse all nodes | view schema
| WBGene00020328 | SMap | S_parent | Sequence | T07H3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-20 | Person_evidence | WBPerson655 | |||||
| Sequence_name | T07H3.5 | ||||||||
| Molecular_name | T07H3.5 | ||||||||
| T07H3.5.1 | |||||||||
| CE19566 | |||||||||
| Other_name | CELE_T07H3.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clec-20 | ||||||||
| DB_info | Database | AceView | gene | 2B878 | |||||
| WormQTL | gene | WBGene00020328 | |||||||
| WormFlux | gene | WBGene00020328 | |||||||
| NDB | locus_tag | CELE_T07H3.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020328|UniProtKB=O76609 | |||||||
| family | PTHR22991 | ||||||||
| NCBI | gene | 188251 | |||||||
| RefSeq | protein | NM_061602.1 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | O76609 | |||||||
| UniProt_GCRP | UniProtAcc | O76609 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-20 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (166) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including daf-2; let-60; and eat-2 based on tiling array; RNA-seq; and microarray studies. Is affected by five chemicals including methylmercuric chloride; sucrose; and stearic acid based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07H3.5 | |||||||
| Corresponding_transcript | T07H3.5.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00052802 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1019962 | ||||||||
| Expr1156403 | |||||||||
| Expr2010119 | |||||||||
| Drives_construct | WBCnstr00025216 | ||||||||
| Construct_product | WBCnstr00025216 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (36) | |||||||||
| Interaction | WBInteraction000198351 | ||||||||
| WBInteraction000314849 | |||||||||
| WBInteraction000344098 | |||||||||
| WBInteraction000396940 | |||||||||
| WBInteraction000425786 | |||||||||
| Map_info | Map | II | Position | -15.3723 | Error | 0.000884 | |||
| Positive | Positive_clone | T07H3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
