WormBase Tree Display for Gene: WBGene00016577
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| WBGene00016577 | SMap | S_parent | Sequence | C41H7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-3 | Person_evidence | WBPerson655 | |||||
| Sequence_name | C41H7.7 | ||||||||
| Molecular_name | C41H7.7 | ||||||||
| C41H7.7.1 | |||||||||
| CE32606 | |||||||||
| Other_name | CELE_C41H7.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clec-3 | ||||||||
| DB_info | Database | AceView | gene | 2D308 | |||||
| WormQTL | gene | WBGene00016577 | |||||||
| WormFlux | gene | WBGene00016577 | |||||||
| NDB | locus_tag | CELE_C41H7.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016577|UniProtKB=O17155 | |||||||
| family | PTHR22991 | ||||||||
| NCBI | gene | 183396 | |||||||
| RefSeq | protein | NM_062025.3 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | O17155 | |||||||
| UniProt_GCRP | UniProtAcc | O17155 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (12) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Automated_description | Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by forty chemicals including hydrogen sulfide; Ethanol; and 1-methylnicotinamide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C41H7.7 | |||||||
| Corresponding_CDS_history | C41H7.7:wp90 | ||||||||
| Corresponding_transcript | C41H7.7.1 | ||||||||
| Associated_feature | WBsf222818 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00042327 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029741 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011856 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1146319 | ||||||||
| Expr2010172 | |||||||||
| Expr2028414 | |||||||||
| Drives_construct | WBCnstr00027967 | ||||||||
| Construct_product | WBCnstr00027967 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (234) | |||||||||
| Interaction | WBInteraction000142642 | ||||||||
| WBInteraction000187436 | |||||||||
| WBInteraction000209090 | |||||||||
| WBInteraction000325236 | |||||||||
| WBInteraction000332998 | |||||||||
| WBInteraction000344054 | |||||||||
| WBInteraction000373834 | |||||||||
| WBInteraction000398074 | |||||||||
| WBInteraction000411983 | |||||||||
| WBInteraction000422456 | |||||||||
| Map_info | Map | II | Position | -9.01504 | Error | 0.010602 | |||
| Positive | Positive_clone | C41H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031002 | ||||||||
| WBPaper00031686 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
