WormBase Tree Display for Gene: WBGene00020220
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| WBGene00020220 | SMap | S_parent | Sequence | T05A7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-140 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | T05A7.2 | ||||||||
| Molecular_name | T05A7.2 | ||||||||
| T05A7.2.1 | |||||||||
| CE02858 | |||||||||
| Other_name | CELE_T05A7.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clec-140 | ||||||||
| DB_info | Database | AceView | gene | 2E965 | |||||
| WormQTL | gene | WBGene00020220 | |||||||
| WormFlux | gene | WBGene00020220 | |||||||
| NDB | locus_tag | CELE_T05A7.2 | |||||||
| NCBI | gene | 188082 | |||||||
| RefSeq | protein | NM_062425.3 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | Q22205 | |||||||
| UniProt_GCRP | UniProtAcc | Q22205 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-140 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (63) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Paralog (51) | |||||||||
| Structured_description | Automated_description | Enriched in cephalic sheath cell; intestine; and neurons based on tiling array and microarray studies. Is affected by several genes including eat-2; sir-2.1; and pmk-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including stavudine; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05A7.2 | |||||||
| Corresponding_transcript | T05A7.2.1 | ||||||||
| Other_sequence | PT02385 | ||||||||
| Associated_feature | WBsf221150 | ||||||||
| WBsf221151 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1024613 | ||||||||
| Expr1038800 | |||||||||
| Expr1156068 | |||||||||
| Expr2010069 | |||||||||
| Expr2028311 | |||||||||
| Drives_construct | WBCnstr00025288 | ||||||||
| Construct_product | WBCnstr00025288 | ||||||||
| Microarray_results (57) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction | WBInteraction000207267 | ||||||||
| Map_info | Map | II | Position | -3.66383 | Error | 0.007014 | |||
| Positive | Positive_clone | T05A7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
