WormBase Tree Display for Gene: WBGene00008597

WBGene00008597 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: clec-55 Person_evidence: WBPerson655
      Sequence_name: F08H9.9
      Molecular_name: F08H9.9
        F08H9.9.1
        CE19781
      Other_name: CELE_F08H9.9 Accession_evidence: NDB BX284605
      Public_name: clec-55
    DB_info: Database: AceView gene 5O961
        WormQTL gene WBGene00008597
        WormFlux gene WBGene00008597
        NDB locus_tag CELE_F08H9.9
        Panther gene CAEEL|WormBase=WBGene00008597|UniProtKB=G5EDN7
          family PTHR47761
        NCBI gene 184218
        RefSeq protein NM_074190.3
        TrEMBL UniProtAcc G5EDN7
        UniProt_GCRP UniProtAcc G5EDN7
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 29 Apr 2005 13:53:46 WBPerson2970 Name_change: CGC_name: clec-55
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (65)
    RNASeq_FPKM (74)
    Ortholog (29)
    Paralog (51)
    Structured_description: Automated_description: Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including aldicarb; methylmercuric chloride; and Mercuric Chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F08H9.9
    Corresponding_transcript: F08H9.9.1
    Other_sequence: HBC03268_1
      CR12531
      ES739910.1
      EX009787.1
      Hbac_isotig04676
      ES409052.1
  Experimental_info: RNAi_result: WBRNAi00044068 Inferred_automatically: RNAi_primary
      WBRNAi00103467 Inferred_automatically: RNAi_primary
      WBRNAi00017319 Inferred_automatically: RNAi_primary
      WBRNAi00044067 Inferred_automatically: RNAi_primary
      WBRNAi00012941 Inferred_automatically: RNAi_primary
      WBRNAi00030681 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1148033
      Expr2010188
      Expr2028430
    Drives_construct: WBCnstr00032842
    Construct_product: WBCnstr00032842
    Microarray_results (17)
    Expression_cluster (95)
    Interaction: WBInteraction000174198
      WBInteraction000174199
      WBInteraction000357164
      WBInteraction000395209
      WBInteraction000442718
      WBInteraction000460174
  Map_info: Map: V Position: 6.4239 Error: 0.001248
    Positive: Positive_clone: F08H9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064552
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene