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WormBase Tree Display for Gene: WBGene00007547

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Name Class

WBGene00007547SMapS_parentSequenceCHROMOSOME_V
IdentityVersion2
NameCGC_namenhr-154Person_evidenceWBPerson600
Sequence_nameC13C4.2
Molecular_nameC13C4.2
C13C4.2.1
CE40299
Other_nameCELE_C13C4.2Accession_evidenceNDBBX284605
Public_namenhr-154
DB_infoDatabaseAceViewgene5M581
WormQTLgeneWBGene00007547
WormFluxgeneWBGene00007547
NDBlocus_tagCELE_C13C4.2
PanthergeneCAEEL|WormBase=WBGene00007547|UniProtKB=O01931
familyPTHR24083
NCBIgene182565
RefSeqproteinNM_073636.5
SwissProtUniProtAccO01931
TREEFAMTREEFAM_IDTF321591
UniProt_GCRPUniProtAccO01931
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
222 Jul 2005 10:29:11WBPerson2970Name_changeCGC_namenhr-154
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (44)
StrainWBStrain00036255
WBStrain00036283
RNASeq_FPKM (74)
GO_annotation (15)
Contained_in_operonCEOP5517
Ortholog (46)
ParalogWBGene00001400Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003613Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003616Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003627Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003628Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003639Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003650Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003654Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003657Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003659Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003681Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003690Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003701Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003706Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003708Caenorhabditis elegansFrom_analysisPanther
WBGene00003710Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003719Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003726Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003727Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007546Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00021848Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011100Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00021417Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015497Caenorhabditis elegansFrom_analysisPanther
WBGene00015705Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020748Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017198Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017787Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008221Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011099Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011098Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011097Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015396Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015395Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016975Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003626Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003678Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003683Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019816Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022423Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044354Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in response to starvation. Predicted to be located in nucleus. Expressed in alimentary muscle; head neurons; intestine; pharynx; and rectal valve cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC13C4.2
Corresponding_CDS_historyC13C4.2:wp160
Corresponding_transcriptC13C4.2.1
Other_sequenceCJC11645_1
JI169635.1
Associated_featureWBsf647330
WBsf978878
WBsf232600
WBsf232601
WBsf232602
Transcription_factorWBTranscriptionFactor000803
Experimental_infoRNAi_result (14)
Expr_patternExpr9036
Expr9038
Expr1023599
Expr1033245
Expr1144496
Expr2014054
Expr2032294
Drives_constructWBCnstr00013683
WBCnstr00033657
Construct_productWBCnstr00016831
WBCnstr00033657
Microarray_results (18)
Expression_cluster (101)
InteractionWBInteraction000535064
WBInteraction000535100
WBInteraction000535384
Map_infoMapVPosition3.64317Error0.001118
PositivePositive_cloneC13C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00034540
WBPaper00036257
WBPaper00039677
WBPaper00056971
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene