WormBase Tree Display for Gene: WBGene00003690

WBGene00003690 SMap: S_parent: Sequence: C28D4
  Identity: Version: 1
    Name: CGC_name: nhr-100 Person_evidence: WBPerson600
      Sequence_name: C28D4.1
      Molecular_name: C28D4.1
        C28D4.1.1
        CE28893
        C28D4.1.2
      Other_name: CELE_C28D4.1 Accession_evidence: NDB BX284604
      Public_name: nhr-100
    DB_info: Database: AceView gene 4K497
        WormQTL gene WBGene00003690
        WormFlux gene WBGene00003690
        NDB locus_tag CELE_C28D4.1
        Panther gene CAEEL|WormBase=WBGene00003690|UniProtKB=O17611
          family PTHR24083
        NCBI gene 177806
        RefSeq protein NM_069330.7
        SwissProt UniProtAcc O17611
        TREEFAM TREEFAM_ID TF315528
        UniProt_GCRP UniProtAcc O17611
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (36)
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP4336
    Ortholog (44)
    Paralog (43)
    Structured_description: Concise_description: nhr-100 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. Paper_evidence: WBPaper00003416
          Person_evidence: WBPerson600
          Curator_confirmed: WBPerson324
          Date_last_updated: 21 Nov 2005 00:00:00
      Automated_description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C28D4.1
    Corresponding_CDS_history: C28D4.1:wp20
      C28D4.1:wp60
    Corresponding_transcript: C28D4.1.1
      C28D4.1.2
    Associated_feature: WBsf978367
      WBsf997467
      WBsf228865
      WBsf228866
      WBsf228867
    Transcription_factor: WBTranscriptionFactor000545
  Experimental_info: RNAi_result: WBRNAi00041407 Inferred_automatically: RNAi_primary
      WBRNAi00011297 Inferred_automatically: RNAi_primary
      WBRNAi00076172 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025435
      Expr1031717
      Expr1145437
      Expr1200125
      Expr1200353
      Expr1200354
      Expr2013997
      Expr2032237
    Drives_construct: WBCnstr00035943
    Construct_product: WBCnstr00016771
      WBCnstr00035943
    Microarray_results (21)
    Expression_cluster (102)
    Interaction: WBInteraction000149438
      WBInteraction000247173
      WBInteraction000279616
      WBInteraction000315069
      WBInteraction000360842
      WBInteraction000526754
  Map_info: Map: IV Position: 4.38949 Error: 0.001289
    Positive: Positive_clone: C28D4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5022
    Pseudo_map_position
  Reference: WBPaper00027309
  Remark: yk734h8, yk737c5, yk718h11, yk786a06 - 2nd half of predicted orf; orf has two NRs fused - operon? [Sluder A][030102 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene