WormBase Tree Display for Gene: WBGene00003690
expand all nodes | collapse all nodes | view schema
WBGene00003690 | SMap | S_parent | Sequence | C28D4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-100 | Person_evidence | WBPerson600 | |||||
Sequence_name | C28D4.1 | ||||||||
Molecular_name | C28D4.1 | ||||||||
C28D4.1.1 | |||||||||
CE28893 | |||||||||
C28D4.1.2 | |||||||||
Other_name | CELE_C28D4.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nhr-100 | ||||||||
DB_info | Database | AceView | gene | 4K497 | |||||
WormQTL | gene | WBGene00003690 | |||||||
WormFlux | gene | WBGene00003690 | |||||||
NDB | locus_tag | CELE_C28D4.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003690|UniProtKB=O17611 | |||||||
family | PTHR24083 | ||||||||
NCBI | gene | 177806 | |||||||
RefSeq | protein | NM_069330.7 | |||||||
SwissProt | UniProtAcc | O17611 | |||||||
TREEFAM | TREEFAM_ID | TF315528 | |||||||
UniProt_GCRP | UniProtAcc | O17611 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (36) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Contained_in_operon | CEOP4336 | ||||||||
Ortholog (44) | |||||||||
Paralog (43) | |||||||||
Structured_description (2) | |||||||||
Molecular_info | Corresponding_CDS | C28D4.1 | |||||||
Corresponding_CDS_history | C28D4.1:wp20 | ||||||||
C28D4.1:wp60 | |||||||||
Corresponding_transcript | C28D4.1.1 | ||||||||
C28D4.1.2 | |||||||||
Associated_feature | WBsf978367 | ||||||||
WBsf997467 | |||||||||
WBsf228865 | |||||||||
WBsf228866 | |||||||||
WBsf228867 | |||||||||
Transcription_factor | WBTranscriptionFactor000545 | ||||||||
Experimental_info | RNAi_result | WBRNAi00041407 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011297 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076172 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025435 | ||||||||
Expr1031717 | |||||||||
Expr1145437 | |||||||||
Expr1200125 | |||||||||
Expr1200353 | |||||||||
Expr1200354 | |||||||||
Expr2013997 | |||||||||
Expr2032237 | |||||||||
Drives_construct | WBCnstr00035943 | ||||||||
Construct_product | WBCnstr00016771 | ||||||||
WBCnstr00035943 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (102) | |||||||||
Interaction | WBInteraction000149438 | ||||||||
WBInteraction000247173 | |||||||||
WBInteraction000279616 | |||||||||
WBInteraction000315069 | |||||||||
WBInteraction000360842 | |||||||||
WBInteraction000526754 | |||||||||
Map_info | Map | IV | Position | 4.38949 | Error | 0.001289 | |||
Positive | Positive_clone | C28D4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5022 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
Remark | yk734h8, yk737c5, yk718h11, yk786a06 - 2nd half of predicted orf; orf has two NRs fused - operon? [Sluder A][030102 ck1] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |