WormBase Tree Display for Gene: WBGene00003727
expand all nodes | collapse all nodes | view schema
| WBGene00003727 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-137 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C56E10.4 | ||||||||
| Molecular_name | C56E10.4a | ||||||||
| C56E10.4a.1 | |||||||||
| CE34281 | |||||||||
| C56E10.4b | |||||||||
| CE37099 | |||||||||
| C56E10.4c | |||||||||
| CE39711 | |||||||||
| C56E10.4b.1 | |||||||||
| C56E10.4c.1 | |||||||||
| Other_name | CELE_C56E10.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nhr-137 | ||||||||
| DB_info | Database | AceView | gene | XH278 | |||||
| WormQTL | gene | WBGene00003727 | |||||||
| WormFlux | gene | WBGene00003727 | |||||||
| NDB | locus_tag | CELE_C56E10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003727|UniProtKB=B3WFU1 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 183865 | |||||||
| RefSeq | protein | NM_001047770.5 | |||||||
| NM_001029335.7 | |||||||||
| NM_001029334.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF315373 | |||||||
| TrEMBL | UniProtAcc | G5EEX1 | |||||||
| B3WFU2 | |||||||||
| B3WFU1 | |||||||||
| UniProt_GCRP | UniProtAcc | B3WFU1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (128) | |||||||||
| Strain | WBStrain00030114 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (65) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in membrane and nucleus. Expressed in neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C56E10.4a | |||||||
| C56E10.4b | |||||||||
| C56E10.4c | |||||||||
| Corresponding_CDS_history | C56E10.4:wp102 | ||||||||
| C56E10.4:wp128 | |||||||||
| Corresponding_transcript | C56E10.4a.1 | ||||||||
| C56E10.4b.1 | |||||||||
| C56E10.4c.1 | |||||||||
| Associated_feature | WBsf654078 | ||||||||
| WBsf654079 | |||||||||
| WBsf654080 | |||||||||
| WBsf670646 | |||||||||
| WBsf670647 | |||||||||
| WBsf670648 | |||||||||
| WBsf978319 | |||||||||
| WBsf1005613 | |||||||||
| WBsf1023128 | |||||||||
| WBsf237510 | |||||||||
| Transcription_factor | WBTranscriptionFactor000662 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00012465 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00023106 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043275 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030203 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7486 | ||||||||
| Expr1020169 | |||||||||
| Expr1031739 | |||||||||
| Expr1147253 | |||||||||
| Expr1200088 | |||||||||
| Expr2014037 | |||||||||
| Expr2032277 | |||||||||
| Drives_construct | WBCnstr00012630 | ||||||||
| WBCnstr00035914 | |||||||||
| Construct_product | WBCnstr00035914 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction | WBInteraction000030943 | ||||||||
| WBInteraction000426474 | |||||||||
| WBInteraction000526753 | |||||||||
| Map_info | Map | X | Position | -2.5656 | Error | 0.010764 | |||
| Positive | Positive_clone | C56E10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4666 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00033379 | |||||||||
| WBPaper00034489 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
