WormBase Tree Display for Gene: WBGene00003678
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| WBGene00003678 | SMap | S_parent | Sequence | K08A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-88 | Person_evidence | WBPerson600 | |||||
| Sequence_name | K08A2.5 | ||||||||
| Molecular_name | K08A2.5a | ||||||||
| K08A2.5a.1 | |||||||||
| CE33143 | |||||||||
| K08A2.5c | |||||||||
| CE29513 | |||||||||
| K08A2.5a.2 | |||||||||
| K08A2.5c.1 | |||||||||
| Other_name | K08A2.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_K08A2.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | nhr-88 | ||||||||
| DB_info | Database | AceView | gene | 2D275 | |||||
| WormQTL | gene | WBGene00003678 | |||||||
| WormFlux | gene | WBGene00003678 | |||||||
| NDB | locus_tag | CELE_K08A2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003678|UniProtKB=H2KZA1 | |||||||
| family | PTHR47519 | ||||||||
| NCBI | gene | 173641 | |||||||
| RefSeq | protein | NM_001381359.3 | |||||||
| NM_001383805.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF315278 | |||||||
| TrEMBL | UniProtAcc | Q7KX66 | |||||||
| H2KZA1 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZA1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (231) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022163 | ||||||||
| 00022164 | |||||||||
| 00022165 | |||||||||
| 00022166 | |||||||||
| 00111509 | |||||||||
| 00111510 | |||||||||
| 00111511 | |||||||||
| 00111512 | |||||||||
| Ortholog | WBGene00054596 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00038791 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00146661 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00159553 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00123924 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00225155 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| CSP28.g15987 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| Cni-nhr-88 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Pan_g22014 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| WBGene00285246 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| Paralog (44) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K08A2.5a | |||||||
| K08A2.5c | |||||||||
| Corresponding_CDS_history | K08A2.5:wp92 | ||||||||
| K08A2.5b:wp194 | |||||||||
| Corresponding_transcript | K08A2.5a.1 | ||||||||
| K08A2.5a.2 | |||||||||
| K08A2.5c.1 | |||||||||
| Other_sequence (27) | |||||||||
| Associated_feature (17) | |||||||||
| Transcription_factor | WBTranscriptionFactor000453 | ||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr12963 | ||||||||
| Expr1014840 | |||||||||
| Expr1031709 | |||||||||
| Expr1153912 | |||||||||
| Expr2014239 | |||||||||
| Expr2032480 | |||||||||
| Drives_construct | WBCnstr00035953 | ||||||||
| WBCnstr00038054 | |||||||||
| Construct_product | WBCnstr00035953 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (196) | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | II | Position | -9.06839 | Error | 0.020233 | |||
| Positive | Positive_clone | K08A2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5440 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026449 | ||||||||
| WBPaper00026596 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00028352 | |||||||||
| WBPaper00039059 | |||||||||
| WBPaper00048060 | |||||||||
| WBPaper00051783 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
