WormBase Tree Display for Gene: WBGene00003650
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| WBGene00003650 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F57A10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-60 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F57A10.5 | ||||||||
| Molecular_name | F57A10.5 | ||||||||
| F57A10.5.1 | |||||||||
| CE16151 | |||||||||
| Other_name | CELE_F57A10.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-60 | ||||||||
| DB_info | Database | AceView | gene | 5Q252 | |||||
| WormQTL | gene | WBGene00003650 | |||||||
| WormFlux | gene | WBGene00003650 | |||||||
| NDB | locus_tag | CELE_F57A10.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003650|UniProtKB=O17898 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 180059 | |||||||
| RefSeq | protein | NM_074529.4 | |||||||
| SwissProt | UniProtAcc | O17898 | |||||||
| TREEFAM | TREEFAM_ID | TF321099 | |||||||
| UniProt_GCRP | UniProtAcc | O17898 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (71) | |||||||||
| Strain | WBStrain00032105 | ||||||||
| WBStrain00032123 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (31) | |||||||||
| Paralog (42) | |||||||||
| Structured_description | Concise_description | nhr-60 encodes a nuclear hormone receptor required for seam cell development, and for embryonic and early larval viability; NHR-60 has no obvious non-nematode orthologs, and is thus classified as 'supplementary'; NHR-60 is expressed throughout development in most cells from one-cell embryos to adults, and is noticeably enriched in seam cells and germline; NHR-60's germline enrichment suggests that it is maternally contributed to oocytes; subcellularly, NHR-60 is localized to the nuclear periphery; nhr-60 is transcribed in embryonic seam cell precursors, and in larval seam cells, pharyngeal gland cells, and uterine vulval uv1 cells; NHR-23 is required for nhr-60 transcription in seam cells but not in pharynx; a dominant-negative NHR-60 isoform displaces endogeneous NHR-60 from the nuclear periphery. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00030774 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 27 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Located in nuclear envelope. Expressed in several structures, including VC neuron; pharyngeal gland cell; ray; seam cell; and uv1. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57A10.5 | |||||||
| Corresponding_transcript | F57A10.5.1 | ||||||||
| Other_sequence | MI07063 | ||||||||
| JI176107.1 | |||||||||
| MIC06343_1 | |||||||||
| Associated_feature | WBsf978703 | ||||||||
| WBsf1002349 | |||||||||
| WBsf1021061 | |||||||||
| WBsf235086 | |||||||||
| WBsf235087 | |||||||||
| Transcription_factor | WBTranscriptionFactor000272 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00032996 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00077959 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015860 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077957 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048799 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077958 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077956 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8038 | ||||||||
| Expr8039 | |||||||||
| Expr8040 | |||||||||
| Expr8041 | |||||||||
| Expr1025577 | |||||||||
| Expr1031691 | |||||||||
| Expr1152551 | |||||||||
| Expr2014211 | |||||||||
| Expr2032452 | |||||||||
| Drives_construct | WBCnstr00013072 | ||||||||
| WBCnstr00035970 | |||||||||
| Construct_product | WBCnstr00035970 | ||||||||
| Antibody | WBAntibody00001268 | ||||||||
| WBAntibody00001269 | |||||||||
| WBAntibody00001437 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction | WBInteraction000031383 | ||||||||
| WBInteraction000358037 | |||||||||
| WBInteraction000401242 | |||||||||
| WBInteraction000429708 | |||||||||
| WBInteraction000502939 | |||||||||
| WBInteraction000540179 | |||||||||
| WBInteraction000541735 | |||||||||
| Map_info | Map | V | Position | 8.81205 | Error | 0.020519 | |||
| Positive | Positive_clone | F57A10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5006 | |||||||
| 5343 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024846 | ||||||||
| WBPaper00025032 | |||||||||
| WBPaper00026048 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00027468 | |||||||||
| WBPaper00030453 | |||||||||
| WBPaper00030774 | |||||||||
| WBPaper00042128 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
