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WormBase Tree Display for Gene: WBGene00017576

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Name Class

WBGene00017576SMapS_parentSequenceCHROMOSOME_IV
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classcdh
Allele (209)
StrainWBStrain00031528
RNASeq_FPKM (74)
GO_annotation00104971
00104972
00104973
00104974
00105059
00122924
00122925
00122926
Ortholog (30)
ParalogWBGene00001475Caenorhabditis elegansFrom_analysisPanther
WBGene00001980Caenorhabditis elegansFrom_analysisPanther
WBGene00022103Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000395Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000399Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000401Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000402Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019994Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncdh-8 encodes a cadherin that may be nematode specific; CDH-8 is predicted to function as a membrane protein that plays a role in cell adhesion and/or morphogenesis, but as loss of cdh-8 activity via mutation or large-scale RNAi experiments results in no obvious abnormalities, the precise role of cdh-8 in C. elegans development and/or behavior is not yet known.Paper_evidenceWBPaper00004508
WBPaper00005654
WBPaper00013424
WBPaper00025054
Curator_confirmedWBPerson1843
Date_last_updated09 Aug 2006 00:00:00
Automated_descriptionPredicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in plasma membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF18F11.3a
F18F11.3b
F18F11.3c
F18F11.3d
F18F11.3e
F18F11.3f
F18F11.3g
F18F11.3h
F18F11.3i
Corresponding_CDS_historyF18F11.3:wp138
Corresponding_transcriptF18F11.3a.1
F18F11.3b.1
F18F11.3c.1
F18F11.3d.1
F18F11.3e.1
F18F11.3f.1
F18F11.3g.1
F18F11.3h.1
F18F11.3i.1
Other_sequenceJI251688.1
Tcol_isotig19609
GO240170.1
CJC07964_1
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00044964Inferred_automaticallyRNAi_primary
WBRNAi00021256Inferred_automaticallyRNAi_primary
WBRNAi00013523Inferred_automaticallyRNAi_primary
WBRNAi00057962Inferred_automaticallyRNAi_primary
WBRNAi00013522Inferred_automaticallyRNAi_primary
Expr_patternExpr1019871
Expr1037548
Expr1148933
Expr2009804
Expr2028045
Drives_constructWBCnstr00027194
Construct_productWBCnstr00027194
Microarray_results (39)
Expression_cluster (143)
InteractionWBInteraction000260252
WBInteraction000286273
WBInteraction000303796
WBInteraction000313612
WBInteraction000351359
WBInteraction000352851
WBInteraction000445411
WBInteraction000585377
Map_infoMapIVPosition-26.4471Error0.029965
PositivePositive_cloneF18F11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5537
4691
Pseudo_map_position
ReferenceWBPaper00004508
WBPaper00013424
WBPaper00018119
WBPaper00027233
WBPaper00038491
WBPaper00053755
WBPaper00055090
WBPaper00058555
WBPaper00060859
WBPaper00064138
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene