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WormBase Tree Display for Gene: WBGene00022754

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Name Class

WBGene00022754SMapS_parentSequenceZK484
IdentityVersion2
NameCGC_namenspd-1Person_evidenceWBPerson1983
Sequence_nameZK484.8
Molecular_nameZK484.8
ZK484.8.1
CE15351
Other_nameCELE_ZK484.8Accession_evidenceNDBBX284601
Public_namenspd-1
DB_infoDatabaseAceViewgene1G674
WormQTLgeneWBGene00022754
WormFluxgeneWBGene00022754
NDBlocus_tagCELE_ZK484.8
PanthergeneCAEEL|WormBase=WBGene00022754|UniProtKB=O44902
familyPTHR35375
NCBIgene172292
RefSeqproteinNM_059358.6
TREEFAMTREEFAM_IDTF319437
TrEMBLUniProtAccO44902
UniProt_GCRPUniProtAccO44902
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:06WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
203 Oct 2006 09:54:23WBPerson2970Name_changeCGC_namenspd-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspd
AlleleWBVar01498782
WBVar00537250
WBVar01499786
WBVar01499054
WBVar00641919
WBVar00641920
WBVar00641921
WBVar01498959
WBVar01500249
RNASeq_FPKM (74)
Ortholog (87)
ParalogWBGene00010633Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012781Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00016058Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017386Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017808Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020715Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00020860Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00021280Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00043147Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including AVK; amphid sheath cell; coelomocyte; intestine; and sperm based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-two chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK484.8
Corresponding_transcriptZK484.8.1
Other_sequenceCBC01618_1
Associated_featureWBsf219540
Experimental_infoRNAi_resultWBRNAi00059452Inferred_automaticallyRNAi_primary
WBRNAi00004941Inferred_automaticallyRNAi_primary
WBRNAi00022620Inferred_automaticallyRNAi_primary
WBRNAi00038310Inferred_automaticallyRNAi_primary
Expr_patternExpr1162878
Expr2014478
Expr2032717
Drives_constructWBCnstr00024001
Construct_productWBCnstr00024001
Microarray_results (13)
Expression_clusterWBPaper00027339:daf-12(rh273)_upregulated
WBPaper00029047:atx-3_upregulated
WBPaper00034636:heat_shock_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_embryo_enriched
WBPaper00037950:coelomocytes_embryo_SelectivelyEnriched
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00041954:ethanol_upregulated
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00043945:MeHg_downregulated
WBPaper00044260:nicotinc-acid_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044736:rising_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045217:prg-1_progressively_regulated
WBPaper00045303:ZK1236.1(tm4178)_upregulated
WBPaper00045316:prg-1_upregulated_L1
WBPaper00045521:Spermatogenic
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00045809:rsd-2(yp10)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00046805:P-granule-RNAi_upregulated_Set2
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049489:AMsh-glia_enriched
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050231:male_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051265:F1_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053368:F.oxysporum_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:female_vs_male_downregulated
WBPaper00053657:JU2519_M.humicola-infection_24hr
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00054996:membranous_oraganelle_CE
WBPaper00054996:unactivated_spermatid_CE
WBPaper00055049:S.gordonii_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055565:AVK_enriched
WBPaper00055648:sperm_expressed
WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056039:ptl-1(ok621)_downregulated
WBPaper00056039:ptrn-1(tm5597)_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056167:Cry5B_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056446:hsb-1(cg116)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:flcn-1(ok975)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:numr-1(RNAi)_upregulated
WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
WBPaper00057347:nhr-14(tm1473)_upreglated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00058948:PA14_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059426:SiO2-nanoparticles_upregulated
WBPaper00059490:dcr-1(m9375)_upregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059735:glucose_downregulated_N2
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060224:atf-6(ok551)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
WBPaper00060921:cat-2(e1112)_downregulated
WBPaper00060921:tbh-1(ok1196)_downregulated
WBPaper00061040:eat-2(ad1116)_downregulated
WBPaper00061045:Y56A3A.22(cck200)_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061478:pie-1(ne4433)_upregulated
WBPaper00061479:hda-1(ne4747)_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:nspd-1-nspd-2
WBPaper00061572:oleic-acid-specific_mating_upregulated
WBPaper00061636:atracurium_downregulated
WBPaper00061651:Sperm_enriched
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062590:Aging_downregulated_neuron
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064473:ets-4(rrr16)_upregulated
WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064721:fasn-1(g14)_upregulated_starved
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064999:miR-229-64-65-66_upregulated
WBPaper00065043:dcap-1(tm3163)_upregulated
WBPaper00065074:glna(-)_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065841:3_3
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4386_cluster_1_1
cgc4489_group_11
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:eri-1(mg366)_downregulated
WBPaper00027111:rde-3(ne298)_downregulated
WBPaper00027111:rde-3(r459)_downregulated
WBPaper00031184:acrylamide_upregulated
WBPaper00034661:AgNPs_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00035873:osmotically_regulated
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00040963:Q50_up
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045374:Benzene_upregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(122_min)
[cgc5767]:expression_class_E_pi(PC32)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
[cgc6390]:Cluster_D
[cgc6390]:spermatogenesis-enriched
InteractionWBInteraction000100279
WBInteraction000100913
WBInteraction000101861
WBInteraction000102258
WBInteraction000102496
WBInteraction000103186
WBInteraction000103331
WBInteraction000103470
WBInteraction000103548
WBInteraction000104099
WBInteraction000104159
WBInteraction000104389
WBInteraction000104533
WBInteraction000104541
WBInteraction000104994
WBInteraction000105112
WBInteraction000105392
WBInteraction000105582
WBInteraction000105697
WBInteraction000105995
WBInteraction000106203
WBInteraction000106243
WBInteraction000106453
WBInteraction000107151
WBInteraction000107153
WBInteraction000108809
WBInteraction000108876
WBInteraction000109147
WBInteraction000109613
WBInteraction000109786
WBInteraction000110200
WBInteraction000111150
WBInteraction000112003
WBInteraction000112681
WBInteraction000115084
WBInteraction000116048
WBInteraction000116367
WBInteraction000117639
WBInteraction000118800
WBInteraction000118839
WBInteraction000118897
WBInteraction000119519
WBInteraction000122050
WBInteraction000124281
WBInteraction000126602
WBInteraction000133943
WBInteraction000134361
WBInteraction000136301
WBInteraction000136679
WBInteraction000137405
WBInteraction000138350
WBInteraction000138747
WBInteraction000142360
WBInteraction000142540
WBInteraction000143068
WBInteraction000143627
WBInteraction000144226
WBInteraction000144731
WBInteraction000144984
WBInteraction000145188
WBInteraction000146137
WBInteraction000148725
WBInteraction000149348
WBInteraction000149504
WBInteraction000151188
WBInteraction000151554
WBInteraction000152543
WBInteraction000159864
WBInteraction000160488
WBInteraction000161232
WBInteraction000163520
WBInteraction000170212
WBInteraction000170983
WBInteraction000171318
WBInteraction000171466
WBInteraction000172484
WBInteraction000177378
WBInteraction000178120
WBInteraction000180369
WBInteraction000183216
WBInteraction000184172
WBInteraction000184410
WBInteraction000185809
WBInteraction000186603
WBInteraction000190385
WBInteraction000191911
WBInteraction000191967
WBInteraction000192703
WBInteraction000194390
WBInteraction000197092
WBInteraction000199169
WBInteraction000199419
WBInteraction000203066
WBInteraction000203160
WBInteraction000203164
WBInteraction000205086
WBInteraction000205745
WBInteraction000208878
WBInteraction000210947
WBInteraction000213494
WBInteraction000215622
WBInteraction000217243
WBInteraction000218356
WBInteraction000220523
WBInteraction000223161
WBInteraction000223264
WBInteraction000223433
WBInteraction000224734
WBInteraction000225815
WBInteraction000227822
WBInteraction000236694
WBInteraction000241696
WBInteraction000243198
WBInteraction000253784
WBInteraction000254115
WBInteraction000258438
WBInteraction000259493
WBInteraction000265436
WBInteraction000267157
WBInteraction000267181
WBInteraction000269839
WBInteraction000270406
WBInteraction000272918
WBInteraction000273376
WBInteraction000276654
WBInteraction000276894
WBInteraction000276912
WBInteraction000278459
WBInteraction000278875
WBInteraction000288757
WBInteraction000289479
WBInteraction000290947
WBInteraction000291446
WBInteraction000296554
WBInteraction000296951
WBInteraction000298653
WBInteraction000301937
WBInteraction000302884
WBInteraction000303261
WBInteraction000303645
WBInteraction000304951
WBInteraction000307943
WBInteraction000308836
WBInteraction000308845
WBInteraction000311851
WBInteraction000313715
WBInteraction000318881
WBInteraction000321474
WBInteraction000322503
WBInteraction000322915
WBInteraction000324111
WBInteraction000337966
WBInteraction000339480
WBInteraction000350427
WBInteraction000352342
WBInteraction000353239
WBInteraction000360102
WBInteraction000360757
WBInteraction000360910
WBInteraction000361101
WBInteraction000361507
WBInteraction000365773
WBInteraction000371187
WBInteraction000371449
WBInteraction000373876
WBInteraction000373967
WBInteraction000377212
WBInteraction000377405
WBInteraction000378510
WBInteraction000383677
WBInteraction000387707
WBInteraction000392927
WBInteraction000395755
WBInteraction000395906
WBInteraction000402736
WBInteraction000406720
WBInteraction000412850
WBInteraction000423301
WBInteraction000427583
WBInteraction000430004
WBInteraction000431588
WBInteraction000433325
WBInteraction000435102
WBInteraction000442663
WBInteraction000442752
WBInteraction000444995
WBInteraction000447345
WBInteraction000448391
WBInteraction000451051
WBInteraction000452189
WBInteraction000456860
WBInteraction000460058
WBInteraction000460742
WBInteraction000576335
WBInteraction000581908
Map_infoMapIPosition0.781024
PositivePositive_cloneZK484Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene