WormBase Tree Display for Gene: WBGene00043147
expand all nodes | collapse all nodes | view schema
| WBGene00043147 | SMap | S_parent | Sequence | C24D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nspd-6 | Person_evidence | WBPerson1983 | |||||
| Sequence_name | C24D10.8 | ||||||||
| Molecular_name | C24D10.8 | ||||||||
| C24D10.8.1 | |||||||||
| CE16879 | |||||||||
| Other_name | CELE_C24D10.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nspd-6 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00043147 | |||||
| WormFlux | gene | WBGene00043147 | |||||||
| NDB | locus_tag | CELE_C24D10.8 | |||||||
| NCBI | gene | 4926899 | |||||||
| RefSeq | protein | NM_001083195.3 | |||||||
| TREEFAM | TREEFAM_ID | TF319437 | |||||||
| TrEMBL | UniProtAcc | G5EG23 | |||||||
| UniProt_GCRP | UniProtAcc | G5EG23 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 04 Oct 2004 10:58:09 | WBPerson1971 | Event | Created | |||
| Killed | |||||||||
| 2 | 03 Oct 2006 09:35:28 | WBPerson1849 | Event | Resurrected | |||||
| 3 | 03 Oct 2006 09:54:23 | WBPerson2970 | Name_change | CGC_name | nspd-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspd | ||||||||
| Allele | WBVar01499754 | ||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar01499242 | |||||||||
| WBVar01499633 | |||||||||
| WBVar01515756 | |||||||||
| WBVar01500245 | |||||||||
| WBVar00297427 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (84) | |||||||||
| Paralog | WBGene00010633 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012781 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00017386 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00017808 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020715 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020860 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021280 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022754 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016058 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in amphid sheath cell; germ line; intestine; sperm; and in male based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by twenty-four chemicals including Ethanol; methylmercury hydroxide; and manganese chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C24D10.8 | |||||||
| Corresponding_CDS_history | C24D10.8:wp122 | ||||||||
| Corresponding_transcript | C24D10.8.1 | ||||||||
| Other_sequence | CBC05875_1 | ||||||||
| CR00100 | |||||||||
| CJC01067_1 | |||||||||
| Associated_feature | WBsf230064 | ||||||||
| WBsf230065 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041089 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011109 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011108 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041090 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1145126 | ||||||||
| Expr2014483 | |||||||||
| Expr2032722 | |||||||||
| Drives_construct | WBCnstr00023825 | ||||||||
| Construct_product | WBCnstr00023825 | ||||||||
| Microarray_results | SMD_C24D10.8 | ||||||||
| 171880_x_at | |||||||||
| 172527_x_at | |||||||||
| 172569_x_at | |||||||||
| A_12_P142110 | |||||||||
| Aff_C24D10.8 | |||||||||
| GPL19516_CGZ0005724 | |||||||||
| GPL21109_C24D10.8 | |||||||||
| GPL3518_CE16879 | |||||||||
| GPL8304_CE_WBGene00043147_A | |||||||||
| Expression_cluster (176) | |||||||||
| Map_info | Map | IV | Position | 1.53696 | |||||
| Positive | Positive_clone | C24D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | The corresponding CDS object for this gene had been created and removed before WormBase introduced the concept of unique gene identifiers. This (dead) gene object exists as an attempt to make sure that a gene ID exists for every worm gene prediction that has ever existed. | Curator_confirmed | WBPerson1971 | ||||||
| [050610 pad] Automatic assignment of Sequence_name connection using info taken from Public_name tags. | |||||||||
| Resurrected due to close similarity to other elegans genes. | Curator_confirmed | WBPerson1849 | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
