WormBase Tree Display for Gene: WBGene00012781

WBGene00012781 SMap: S_parent: Sequence: Y43C5A
  Identity: Version: 2
    Name: CGC_name: nspd-7 Person_evidence: WBPerson1983
      Sequence_name: Y43C5A.1
      Molecular_name: Y43C5A.1
        Y43C5A.1.1
        CE19150
      Other_name: CELE_Y43C5A.1 Accession_evidence: NDB BX284604
      Public_name: nspd-7
    DB_info: Database: AceView gene 4L34
        WormQTL gene WBGene00012781
        WormFlux gene WBGene00012781
        NDB locus_tag CELE_Y43C5A.1
        Panther gene CAEEL|WormBase=WBGene00012781|UniProtKB=Q9XXF2
          family PTHR35375
        NCBI gene 177910
        RefSeq protein NM_069481.6
        TREEFAM TREEFAM_ID TF319437
        TrEMBL UniProtAcc Q9XXF2
        UniProt_GCRP UniProtAcc Q9XXF2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Oct 2006 09:54:22 WBPerson2970 Name_change: CGC_name: nspd-7
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    Allele (15)
    RNASeq_FPKM (74)
    Ortholog (87)
    Paralog: WBGene00010633 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00017808 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00017386 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020715 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00021280 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00043147 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00022754 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00020860 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00016058 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine; sperm; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-four chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y43C5A.1
    Corresponding_transcript: Y43C5A.1.1
    Other_sequence: FG621270.1
    Associated_feature: WBsf997580
      WBsf230707
  Experimental_info: RNAi_result: WBRNAi00020518 Inferred_automatically: RNAi_primary
      WBRNAi00007326 Inferred_automatically: RNAi_primary
      WBRNAi00110638 Inferred_automatically: RNAi_primary
      WBRNAi00056460 Inferred_automatically: RNAi_primary
      WBRNAi00022554 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011315
      Expr1159933
      Expr2014484
      Expr2032723
    Drives_construct: WBCnstr00029845
    Construct_product: WBCnstr00029845
    Microarray_results (14)
    Expression_cluster (220)
    Interaction (107)
  Map_info: Map: IV Position: 4.56484
    Positive: Positive_clone: Y43C5A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene