WormBase Tree Display for Gene: WBGene00022754

WBGene00022754 SMap: S_parent: Sequence: ZK484
  Identity: Version: 2
    Name: CGC_name: nspd-1 Person_evidence: WBPerson1983
      Sequence_name: ZK484.8
      Molecular_name: ZK484.8
        ZK484.8.1
        CE15351
      Other_name: CELE_ZK484.8 Accession_evidence: NDB BX284601
      Public_name: nspd-1
    DB_info: Database: AceView gene 1G674
        WormQTL gene WBGene00022754
        WormFlux gene WBGene00022754
        NDB locus_tag CELE_ZK484.8
        Panther gene CAEEL|WormBase=WBGene00022754|UniProtKB=O44902
          family PTHR35375
        NCBI gene 172292
        RefSeq protein NM_059358.6
        TREEFAM TREEFAM_ID TF319437
        TrEMBL UniProtAcc O44902
        UniProt_GCRP UniProtAcc O44902
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:06 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 03 Oct 2006 09:54:23 WBPerson2970 Name_change: CGC_name: nspd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    Allele: WBVar01498782
      WBVar00537250
      WBVar01499786
      WBVar01499054
      WBVar00641919
      WBVar00641920
      WBVar00641921
      WBVar01498959
      WBVar01500249
    RNASeq_FPKM (74)
    Ortholog (87)
    Paralog: WBGene00010633 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00012781 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00016058 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017386 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00017808 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00020715 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00020860 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021280 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00043147 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including AVK; amphid sheath cell; coelomocyte; intestine; and sperm based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-two chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK484.8
    Corresponding_transcript: ZK484.8.1
    Other_sequence: CBC01618_1
    Associated_feature: WBsf219540
  Experimental_info: RNAi_result: WBRNAi00059452 Inferred_automatically: RNAi_primary
      WBRNAi00004941 Inferred_automatically: RNAi_primary
      WBRNAi00022620 Inferred_automatically: RNAi_primary
      WBRNAi00038310 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1162878
      Expr2014478
      Expr2032717
    Drives_construct: WBCnstr00024001
    Construct_product: WBCnstr00024001
    Microarray_results (13)
    Expression_cluster (241)
    Interaction (195)
  Map_info: Map: I Position: 0.781024
    Positive: Positive_clone: ZK484 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene