WormBase Tree Display for Gene: WBGene00017386

WBGene00017386 SMap: S_parent: Sequence: F11G11
  Identity: Version: 2
    Name: CGC_name: nspd-5 Person_evidence: WBPerson1983
      Sequence_name: F11G11.8
      Molecular_name: F11G11.8
        F11G11.8.1
        CE02882
      Other_name: CELE_F11G11.8 Accession_evidence: NDB BX284602
      Public_name: nspd-5
    DB_info: Database: AceView gene 2F150
        WormQTL gene WBGene00017386
        WormFlux gene WBGene00017386
        NDB locus_tag CELE_F11G11.8
        Panther gene CAEEL|WormBase=WBGene00017386|UniProtKB=G5EES8
          family PTHR35375
        NCBI gene 173837
        RefSeq protein NM_062474.6
        TREEFAM TREEFAM_ID TF319437
        TrEMBL UniProtAcc G5EES8
        UniProt_GCRP UniProtAcc G5EES8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 03 Oct 2006 09:54:23 WBPerson2970 Name_change: CGC_name: nspd-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    Allele: WBVar01499702
      WBVar02151062
      WBVar01498435
      WBVar02074659
      WBVar00364960
      WBVar00364961
      WBVar01499506
      WBVar00728533
      WBVar01499507
    RNASeq_FPKM (74)
    Ortholog (84)
    Paralog: WBGene00010633 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012781 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016058 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017808 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00021280 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00022754 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00020860 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00020715 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00043147 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including AVK; amphid sheath cell; germ line; intestine; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-seven chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F11G11.8
    Corresponding_transcript: F11G11.8.1
    Other_sequence: CJC05614_1
      CJC00637_3
      CR02183
      CJC00637_1
      FG621263.1
      CJC00550_2
      CJC04830_1
      CRC01200_2
      CJC00760_2
    Associated_feature: WBsf222962
  Experimental_info: RNAi_result: WBRNAi00019060 Inferred_automatically: RNAi_primary
      WBRNAi00007482 Inferred_automatically: RNAi_primary
      WBRNAi00053901 Inferred_automatically: RNAi_primary
      WBRNAi00030843 Inferred_automatically: RNAi_primary
      WBRNAi00044415 Inferred_automatically: RNAi_primary
      WBRNAi00013149 Inferred_automatically: RNAi_primary
      WBRNAi00022595 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021422
      Expr1148363
      Expr2014482
      Expr2032721
    Drives_construct: WBCnstr00027335
    Construct_product: WBCnstr00027335
    Microarray_results: SMD_F11G11.8
      172546_x_at
      Aff_F11G11.8
      GPL8304_CE_WBGene00017386_A
      GPL8673_F11G11_8P00002
      GPL8673_F11G11_8P00069
    Expression_cluster (207)
    Interaction (140)
  Map_info: Map: II Position: -2.98517 Error: 0.001881
    Positive: Positive_clone: F11G11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene