WormBase Tree Display for Gene: WBGene00010633

WBGene00010633 SMap: S_parent: Sequence: K07F5
  Identity: Version: 2
    Name: CGC_name: nspd-2 Person_evidence: WBPerson1983
      Sequence_name: K07F5.5
      Molecular_name: K07F5.5
        K07F5.5.1
        CE06120
      Other_name: CELE_K07F5.5 Accession_evidence: NDB BX284604
      Public_name: nspd-2
    DB_info: Database: AceView gene 4K609
        WormQTL gene WBGene00010633
        WormFlux gene WBGene00010633
        NDB locus_tag CELE_K07F5.5
        Panther gene CAEEL|WormBase=WBGene00010633|UniProtKB=Q21293
          family PTHR35375
        NCBI gene 177831
        RefSeq protein NM_069362.6
        TREEFAM TREEFAM_ID TF319437
        TrEMBL UniProtAcc Q21293
        UniProt_GCRP UniProtAcc Q21293
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Oct 2006 09:54:23 WBPerson2970 Name_change: CGC_name: nspd-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    Allele: WBVar01500079
      WBVar00934287
      WBVar01498996
      WBVar01499925
      WBVar01499770
      WBVar01499771
      WBVar02123820
      WBVar01500038
      WBVar01500039
      WBVar01500245
    RNASeq_FPKM (74)
    Ortholog (87)
    Paralog: WBGene00017808 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00017386 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00020715 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00012781 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00043147 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00020860 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021280 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00022754 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00016058 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in amphid sheath cell; germline precursor cell; intestine; sperm; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; age-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by twenty-eight chemicals including Ethanol; methylmercury hydroxide; and 1-methylnicotinamide based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K07F5.5
    Corresponding_transcript: K07F5.5.1
    Other_sequence: CBC16605_1
      CRC11671_1
      PPC05096_1
      CJC12464_1
      PP02027
    Associated_feature: WBsf228886
  Experimental_info: RNAi_result: WBRNAi00007276 Inferred_automatically: RNAi_primary
      WBRNAi00022544 Inferred_automatically: RNAi_primary
      WBRNAi00050190 Inferred_automatically: RNAi_primary
      WBRNAi00034084 Inferred_automatically: RNAi_primary
      WBRNAi00016750 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017351
      Expr1153886
      Expr2014479
      Expr2032718
    Drives_construct: WBCnstr00031268
    Construct_product: WBCnstr00031268
    Microarray_results (12)
    Expression_cluster (246)
    Interaction (214)
  Map_info: Map: IV Position: 4.43268
    Positive: Positive_clone: K07F5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene