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WormBase Tree Display for Gene: WBGene00020080

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Name Class

WBGene00020080SMapS_parentSequenceR52
IdentityVersion3
NameCGC_namemath-37Person_evidenceWBPerson655
Sequence_nameR52.9
Molecular_nameR52.9
R52.9.1
CE45905
Other_nameCELE_R52.9Accession_evidenceNDBBX284602
Public_namemath-37
DB_infoDatabaseAceViewgene2C406
WormQTLgeneWBGene00020080
WormFluxgeneWBGene00020080
NDBlocus_tagCELE_R52.9
PanthergeneCAEEL|WormBase=WBGene00020080|UniProtKB=F3NWW4
familyPTHR46308
NCBIgene187883
RefSeqproteinNM_061787.5
TREEFAMTREEFAM_IDTF322050
TrEMBLUniProtAccF3NWW4
UniProt_GCRPUniProtAccF3NWW4
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:02WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Dec 2005 17:54:47WBPerson2970Name_changeCGC_namemath-37
308 Jul 2011 16:52:13WBPerson2970EventAcquires_mergeWBGene00020079
Acquires_mergeWBGene00020079
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmath
Allele (182)
RNASeq_FPKM (74)
Contained_in_operonCEOP2684
Ortholog (18)
ParalogWBGene00015015Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015606Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00015608Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015609Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015827Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015828Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015829Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015832Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015833Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00015834Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015835Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015836Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015837Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015838Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00015839Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016544Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016554Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00016555Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00016556Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016717Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016718Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016719Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016720Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00018100Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00018101Caenorhabditis elegansFrom_analysisPanther
WBGene00018102Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018662Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WBGene00018663Caenorhabditis elegansFrom_analysisPanther
WBGene00019135Caenorhabditis elegansFrom_analysisTreeFam
WBGene00020075Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WBGene00020360Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00021772Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00022689Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00022690Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00022691Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WBGene00021193Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020532Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020358Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020359Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00235354Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006464Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009135Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009137Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009247Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009945Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012195Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012196Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013569Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015012Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015014Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015590Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015591Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015595Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015798Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017405Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017450Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017452Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017460Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018223Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018249Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018442Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018452Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018665Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018667Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018668Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019132Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019138Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019139Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019140Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019141Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019421Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019699Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020073Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020325Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020326Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020329Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020859Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021725Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021726Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021853Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00023427Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044346Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00045036Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00305158Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in AFD and intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; glp-1; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; methylmercuric chloride; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR52.9
Corresponding_CDS_historyR52.9:wp125
R52.9:wp153
R52.9:wp225
Corresponding_transcriptR52.9.1
Associated_featureWBsf222746
Experimental_infoRNAi_resultWBRNAi00052035Inferred_automaticallyRNAi_primary
WBRNAi00017910Inferred_automaticallyRNAi_primary
WBRNAi00017909Inferred_automaticallyRNAi_primary
WBRNAi00052034Inferred_automaticallyRNAi_primary
WBRNAi00034966Inferred_automaticallyRNAi_primary
Expr_patternExpr1027975
Expr1038721
Expr1155670
Expr2013409
Expr2031643
Drives_constructWBCnstr00037823
Construct_productWBCnstr00037823
Microarray_results (24)
Expression_cluster (172)
InteractionWBInteraction000163932
WBInteraction000264712
WBInteraction000280339
WBInteraction000307396
WBInteraction000311700
WBInteraction000330596
WBInteraction000351644
WBInteraction000357643
WBInteraction000367826
Map_infoMapIIPosition-13.8519Error0.001604
PositivePositive_cloneR52Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene