WormBase Tree Display for Gene: WBGene00015609

WBGene00015609 SMap: S_parent: Sequence: C08F1
  Identity: Version: 2
    Name: CGC_name: math-4 Person_evidence: WBPerson655
      Sequence_name: C08F1.5
      Molecular_name: C08F1.5
        C08F1.5.1
        CE46867
      Other_name: CELE_C08F1.5 Accession_evidence: NDB BX284602
      Public_name: math-4
    DB_info: Database: WormQTL gene WBGene00015609
        SignaLink protein WBGene00015609
        WormFlux gene WBGene00015609
        NDB locus_tag CELE_C08F1.5
        Panther gene CAEEL|WormBase=WBGene00015609|UniProtKB=Q2V074
          family PTHR46308
        NCBI gene 173548
        RefSeq protein NM_001047270.4
        TrEMBL UniProtAcc H2KYK6
        UniProt_GCRP UniProtAcc H2KYK6
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 17:54:47 WBPerson2970 Name_change: CGC_name: math-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: math
    Allele (250)
    RNASeq_FPKM (74)
    Ortholog: WBGene00154588 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00143314 Caenorhabditis brenneri From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19300 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19304 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      chrII_pilon.g3473 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (85)
    Structured_description: Automated_description: Enriched in body wall muscle cell from MS lineage; head mesodermal cell; intestine; and rectal muscle based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq and microarray studies. Is affected by twelve chemicals including hydrogen sulfide; Zidovudine; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C08F1.5
    Corresponding_CDS_history: C08F1.5:wp84
      C08F1.5:wp149
      C08F1.5:wp152
      C08F1.5a:wp229
      C08F1.5b:wp229
      C08F1.5b:wp274
    Corresponding_transcript: C08F1.5.1
    Associated_feature: WBsf649892
      WBsf649893
      WBsf665366
      WBsf986811
      WBsf986812
      WBsf1011628
      WBsf1011629
      WBsf1011630
      WBsf222721
  Experimental_info: RNAi_result: WBRNAi00010461 Inferred_automatically: RNAi_primary
      WBRNAi00066641 Inferred_automatically: RNAi_primary
      WBRNAi00040108 Inferred_automatically: RNAi_primary
      WBRNAi00000751 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019259
      Expr1036681
      Expr1144182
      Expr2013421
      Expr2031655
    Drives_construct: WBCnstr00028715
    Construct_product: WBCnstr00028715
    Microarray_results (17)
    Expression_cluster (149)
    Interaction (16)
  Map_info: Map: II Position: -14.4278 Error: 0.005017
    Positive: Positive_clone: C08F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene