WormBase Tree Display for Gene: WBGene00017460
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| WBGene00017460 | SMap | S_parent | Sequence | F14D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bath-30 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F14D2.12 | ||||||||
| Molecular_name | F14D2.12 | ||||||||
| F14D2.12.1 | |||||||||
| CE31786 | |||||||||
| Other_name | F14D2.g | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F14D2.12 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | bath-30 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Aug 2005 16:08:42 | WBPerson2970 | Name_change | CGC_name | bath-30 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bath | ||||||||
| Allele (105) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP2092 | ||||||||
| Ortholog | WBGene00060799 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00038820 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
| WBGene00146242 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| WBGene00152896 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00091340 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
| WBGene00094146 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
| WBGene00112457 | Pristionchus pacificus | From_analysis | OMA | ||||||
| CSP31.g12656 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| GCK72_007445 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g3946 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (81) | |||||||||
| Structured_description | Automated_description | Enriched in germ line; germline precursor cell; head mesodermal cell; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and gld-1 based on microarray and RNA-seq studies. Is affected by eleven chemicals including manganese chloride; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; TRAF-like; SKP1/BTB/POZ domain superfamily; Phosphorylation site; and BTB/POZ domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F14D2.12 | |||||||
| Corresponding_transcript | F14D2.12.1 | ||||||||
| Other_sequence | CRC04545_1 | ||||||||
| CR11142 | |||||||||
| Associated_feature | WBsf222848 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1021269 | ||||||||
| Expr1037511 | |||||||||
| Expr1148547 | |||||||||
| Expr2009547 | |||||||||
| Expr2027784 | |||||||||
| Drives_construct | WBCnstr00027282 | ||||||||
| Construct_product | WBCnstr00027282 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction | WBInteraction000031169 | ||||||||
| WBInteraction000511463 | |||||||||
| WBInteraction000547397 | |||||||||
| Map_info | Map | II | Position | -6.59207 | Error | 0.024104 | |||
| Positive | Positive_clone | F14D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
