WormBase Tree Display for Gene: WBGene00016555
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| WBGene00016555 | SMap | S_parent | Sequence | C40D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | math-20 | Person_evidence | WBPerson655 | |||||
| Sequence_name | C40D2.2 | ||||||||
| Molecular_name | C40D2.2 | ||||||||
| C40D2.2.1 | |||||||||
| CE19374 | |||||||||
| Other_name | CELE_C40D2.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | math-20 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 17:54:47 | WBPerson2970 | Name_change | CGC_name | math-20 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | math | ||||||||
| Allele (132) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (84) | |||||||||
| Structured_description | Concise_description | The C40D2.2 gene encodes a protein closely similar to C46F9.3, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in intestine based on tiling array; RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including rotenone; stavudine; and Rifampin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C40D2.2 | |||||||
| Corresponding_transcript | C40D2.2.1 | ||||||||
| Associated_feature | WBsf220897 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029705 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021930 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042253 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042254 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011815 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1146245 | ||||||||
| Expr2013397 | |||||||||
| Expr2031631 | |||||||||
| Drives_construct | WBCnstr00027980 | ||||||||
| Construct_product | WBCnstr00027980 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | II | Position | -14.0533 | Error | 0.00423 | |||
| Positive | Positive_clone | C40D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
