WormBase Tree Display for Gene: WBGene00016555
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WBGene00016555 | SMap | S_parent | Sequence | C40D2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | math | ||||||
Allele (132) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (18) | |||||||
Paralog (84) | |||||||
Structured_description | Concise_description | The C40D2.2 gene encodes a protein closely similar to C46F9.3, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in intestine based on tiling array; RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including rotenone; stavudine; and Rifampin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C40D2.2 | |||||
Corresponding_transcript | C40D2.2.1 | ||||||
Associated_feature | WBsf220897 | ||||||
Experimental_info | RNAi_result | WBRNAi00029705 | Inferred_automatically | RNAi_primary | |||
WBRNAi00021930 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042253 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042254 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011815 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1146245 | ||||||
Expr2013397 | |||||||
Expr2031631 | |||||||
Drives_construct | WBCnstr00027980 | ||||||
Construct_product | WBCnstr00027980 | ||||||
Microarray_results (15) | |||||||
Expression_cluster (163) | |||||||
Interaction (11) | |||||||
Map_info | Map | II | Position | -14.0533 | Error | 0.00423 | |
Positive | Positive_clone | C40D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |