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WormBase Tree Display for Gene: WBGene00018102

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Name Class

WBGene00018102SMapS_parentSequenceF36H5
IdentityVersion2
NameCGC_namemath-28Person_evidenceWBPerson655
Sequence_nameF36H5.3
Molecular_nameF36H5.3a
F36H5.3a.1
CE35525
F36H5.3b
CE09960
F36H5.3b.1
Other_nameCELE_F36H5.3Accession_evidenceNDBBX284602
Public_namemath-28
DB_infoDatabaseWormQTLgeneWBGene00018102
SignaLinkproteinWBGene00018102
WormFluxgeneWBGene00018102
NDBlocus_tagCELE_F36H5.3
PanthergeneCAEEL|WormBase=WBGene00018102|UniProtKB=Q2L6V3
familyPTHR46308
NCBIgene185383
RefSeqproteinNM_001047308.1
NM_001047307.3
TREEFAMTREEFAM_IDTF322050
TrEMBLUniProtAccQ2L6V3
P91298
UniProt_GCRPUniProtAccQ2L6V3
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:59WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Dec 2005 17:54:47WBPerson2970Name_changeCGC_namemath-28
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmath
Allele (95)
RNASeq_FPKM (74)
OrthologWBGene00154588Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143314Caenorhabditis brenneriFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19300Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19304Caenorhabditis tropicalisFrom_analysisWormBase-Compara
chrII_pilon.g3468Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (85)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSF36H5.3a
F36H5.3b
Corresponding_CDS_historyF36H5.3:wp107
F36H5.3:wp153
Corresponding_transcriptF36H5.3a.1
F36H5.3b.1
Associated_featureWBsf986808
Experimental_infoRNAi_resultWBRNAi00014456Inferred_automaticallyRNAi_primary
WBRNAi00046542Inferred_automaticallyRNAi_primary
WBRNAi00031884Inferred_automaticallyRNAi_primary
Expr_patternExpr1015608
Expr1150434
Expr2013404
Expr2031638
Microarray_results (22)
Expression_cluster (128)
SAGE_tagSAGE:ttgaaatttaStrandSense
Unambiguously_mapped
SAGE:aagtccttctStrandAntisense
SAGE:ttggcaatatStrandAntisense
SAGE:gagaaggactStrandSense
Unambiguously_mapped
SAGE:aataaacctcStrandAntisense
SAGE:gtttttttcaStrandAntisense
SAGE:tgaaaattaaStrandSense
Unambiguously_mapped
SAGE:aataaacctcacacaagStrandAntisense
SAGE:agagagcaggStrandAntisense
SAGE:gaatctcaaaStrandAntisense
InteractionWBInteraction000192087
WBInteraction000338149
WBInteraction000352732
WBInteraction000365770
WBInteraction000413487
Map_infoMapIIPosition-14.4752Error0.004334
PositivePositive_cloneF36H5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene