WormBase Tree Display for Gene: WBGene00015608

WBGene00015608 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: math-3 Person_evidence: WBPerson655
      Sequence_name: C08F1.4
      Molecular_name: C08F1.4a
        C08F1.4a.1
        CE27059
        C08F1.4b
        CE31771
        C08F1.4a.2
        C08F1.4a.3
        C08F1.4b.1
      Other_name: CELE_C08F1.4 Accession_evidence: NDB BX284602
      Public_name: math-3
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 17:54:47 WBPerson2970 Name_change: CGC_name: math-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: math
    Allele (288)
    RNASeq_FPKM (74)
    Ortholog (20)
    Paralog (85)
    Structured_description: Concise_description: The C08F1.4 gene encodes a protein closely similar to F36H5.2, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis. Paper_evidence: WBPaper00004589
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in head mesodermal cell; intestine; mechanosensory neurons; and pharyngeal muscle cell based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including Ethanol; rotenone; and Tunicamycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C08F1.4a
      C08F1.4b
    Corresponding_transcript: C08F1.4a.1
      C08F1.4a.2
      C08F1.4a.3
      C08F1.4b.1
    Associated_feature: WBsf220876
  Experimental_info: RNAi_result: WBRNAi00040107 Inferred_automatically: RNAi_primary
      WBRNAi00001135 Inferred_automatically: RNAi_primary
      WBRNAi00028678 Inferred_automatically: RNAi_primary
      WBRNAi00010460 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020625
      Expr1144181
      Expr2013412
      Expr2031646
    Drives_construct: WBCnstr00028716
    Construct_product: WBCnstr00028716
    Microarray_results (32)
    Expression_cluster (174)
    SAGE_tag: SAGE:ttaaaatttt Strand: Sense
        Unambiguously_mapped
      SAGE:aacatttgat Strand: Antisense
      SAGE:gttgaagaat Strand: Sense
        Unambiguously_mapped
      SAGE:aaaattttaa Strand: Antisense
      SAGE:aagccagtat Strand: Sense
        Unambiguously_mapped
      SAGE:gaggatttcc Strand: Sense
        Unambiguously_mapped
      SAGE:gaatgtcgtaccattct Strand: Antisense
      SAGE:gaggatagag Strand: Sense
        Unambiguously_mapped
      SAGE:tcgttccatt Strand: Antisense
      SAGE:gagcatcaca Strand: Antisense
    Interaction (16)
  Map_info: Map: II Position: -14.4399 Error: 0.005013
    Positive: Positive_clone: C08F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene