WormBase Tree Display for Gene: WBGene00015608
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WBGene00015608 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | math-3 | Person_evidence | WBPerson655 | |||||
Sequence_name | C08F1.4 | ||||||||
Molecular_name | C08F1.4a | ||||||||
C08F1.4a.1 | |||||||||
CE27059 | |||||||||
C08F1.4b | |||||||||
CE31771 | |||||||||
C08F1.4a.2 | |||||||||
C08F1.4a.3 | |||||||||
C08F1.4b.1 | |||||||||
Other_name | CELE_C08F1.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | math-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 17:54:47 | WBPerson2970 | Name_change | CGC_name | math-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | math | ||||||||
Allele (288) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (20) | |||||||||
Paralog (85) | |||||||||
Structured_description | Concise_description | The C08F1.4 gene encodes a protein closely similar to F36H5.2, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in head mesodermal cell; intestine; mechanosensory neurons; and pharyngeal muscle cell based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including Ethanol; rotenone; and Tunicamycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C08F1.4a | |||||||
C08F1.4b | |||||||||
Corresponding_transcript | C08F1.4a.1 | ||||||||
C08F1.4a.2 | |||||||||
C08F1.4a.3 | |||||||||
C08F1.4b.1 | |||||||||
Associated_feature | WBsf220876 | ||||||||
Experimental_info | RNAi_result | WBRNAi00040107 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001135 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028678 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010460 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020625 | ||||||||
Expr1144181 | |||||||||
Expr2013412 | |||||||||
Expr2031646 | |||||||||
Drives_construct | WBCnstr00028716 | ||||||||
Construct_product | WBCnstr00028716 | ||||||||
Microarray_results (32) | |||||||||
Expression_cluster (174) | |||||||||
SAGE_tag | SAGE:ttaaaatttt | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:aacatttgat | Strand | Antisense | |||||||
SAGE:gttgaagaat | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:aaaattttaa | Strand | Antisense | |||||||
SAGE:aagccagtat | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gaggatttcc | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gaatgtcgtaccattct | Strand | Antisense | |||||||
SAGE:gaggatagag | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:tcgttccatt | Strand | Antisense | |||||||
SAGE:gagcatcaca | Strand | Antisense | |||||||
Interaction | WBInteraction000103376 | ||||||||
WBInteraction000111941 | |||||||||
WBInteraction000194290 | |||||||||
WBInteraction000304440 | |||||||||
WBInteraction000307054 | |||||||||
WBInteraction000308208 | |||||||||
WBInteraction000365293 | |||||||||
WBInteraction000379544 | |||||||||
WBInteraction000387005 | |||||||||
WBInteraction000387576 | |||||||||
WBInteraction000396687 | |||||||||
WBInteraction000407608 | |||||||||
WBInteraction000428595 | |||||||||
WBInteraction000431203 | |||||||||
WBInteraction000462499 | |||||||||
WBInteraction000585445 | |||||||||
Map_info | Map | II | Position | -14.4399 | Error | 0.005013 | |||
Positive | Positive_clone | C08F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |