WormBase Tree Display for Gene: WBGene00004316
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WBGene00004316 | SMap | S_parent | Sequence | F37A4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | rbf-1 | Person_evidence | WBPerson451 | |||||
Sequence_name | F37A4.7 | ||||||||
Molecular_name (14) | |||||||||
Other_name | Rabph | Paper_evidence | WBPaper00013595 | ||||||
CELE_F37A4.7 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | rbf-1 | ||||||||
DB_info | Database | AceView | gene | 3H793 | |||||
WormQTL | gene | WBGene00004316 | |||||||
WormFlux | gene | WBGene00004316 | |||||||
NDB | locus_tag | CELE_F37A4.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004316|UniProtKB=P41885 | |||||||
family | PTHR45729 | ||||||||
NCBI | gene | 175943 | |||||||
RefSeq | protein | NM_001392126.1 | |||||||
NM_001027396.5 | |||||||||
NM_001379772.1 | |||||||||
NM_001027395.5 | |||||||||
SwissProt | UniProtAcc | P41885 | |||||||
TREEFAM | TREEFAM_ID | TF351844 | |||||||
UniProt_GCRP | UniProtAcc | P41885 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rbf | ||||||||
Allele (346) | |||||||||
Strain | WBStrain00029052 | ||||||||
WBStrain00037267 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog (51) | |||||||||
Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00004922 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004923 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004924 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004925 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004926 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00011682 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | rbf-1 encodes the sole C. elegans rabphilin homolog; rbf-1 activity is required for normal basal rates of locomotion (in the absence of stimulation) and, in combination with SNARE components ric-4, snb-1, and unc-64, for normal rates of both basal and stimulated locomotion; RBF-1 is expressed in the nerve ring and in the dorsal and ventral nerve cords and colocalizes with synaptic vesicle markers. | Paper_evidence | WBPaper00004976 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 22 Jun 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable metal ion binding activity. Involved in dense core granule exocytosis and positive regulation of locomotion. Located in synaptic vesicle. Expressed in dorsal nerve cord; nerve ring; neurons; and ventral nerve cord. Is an ortholog of human RPH3A (rabphilin 3A). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F37A4.7a | |||||||
F37A4.7b | |||||||||
F37A4.7c | |||||||||
F37A4.7d | |||||||||
Corresponding_CDS_history | F37A4.7d:wp275 | ||||||||
Corresponding_transcript | F37A4.7a.1 | ||||||||
F37A4.7a.2 | |||||||||
F37A4.7a.3 | |||||||||
F37A4.7b.1 | |||||||||
F37A4.7c.1 | |||||||||
F37A4.7d.1 | |||||||||
Other_sequence (48) | |||||||||
Associated_feature (35) | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr1718 | ||||||||
Expr1719 | |||||||||
Expr3633 | |||||||||
Expr1024340 | |||||||||
Expr1032141 | |||||||||
Expr1150454 | |||||||||
Expr2015267 | |||||||||
Expr2033501 | |||||||||
Drives_construct | WBCnstr00000698 | ||||||||
WBCnstr00010412 | |||||||||
Construct_product | WBCnstr00000698 | ||||||||
WBCnstr00007721 | |||||||||
WBCnstr00010412 | |||||||||
WBCnstr00011558 | |||||||||
Antibody | WBAntibody00000428 | ||||||||
Microarray_results (43) | |||||||||
Expression_cluster (171) | |||||||||
Interaction (27) | |||||||||
Map_info | Map | III | Position | -1.01086 | Error | 0.003652 | |||
Positive | Positive_clone | F37A4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4626 | |||||||
4987 | |||||||||
5453 | |||||||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |