WormBase Tree Display for Gene: WBGene00004925
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| WBGene00004925 | Evidence | Person_evidence | WBPerson508 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R12A1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snt-5 | Person_evidence | WBPerson508 | |||||
| Sequence_name | R12A1.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_R12A1.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | snt-5 | ||||||||
| DB_info | Database | AceView | gene | 5B872 | |||||
| WormQTL | gene | WBGene00004925 | |||||||
| WormFlux | gene | WBGene00004925 | |||||||
| NDB | locus_tag | CELE_R12A1.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004925|UniProtKB=O16700 | |||||||
| family | PTHR10024 | ||||||||
| NCBI | gene | 178631 | |||||||
| RefSeq | protein | NM_001313245.4 | |||||||
| NM_071008.5 | |||||||||
| NM_001313246.3 | |||||||||
| NM_001313247.3 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3AY30 | |||||||
| A0A0K3AV38 | |||||||||
| A0A0K3AST7 | |||||||||
| O16700 | |||||||||
| UniProt_GCRP | UniProtAcc | O16700 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snt | ||||||||
| Allele (363) | |||||||||
| Strain | WBStrain00033077 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (60) | |||||||||
| Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004922 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004923 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004924 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004926 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011682 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Is an ortholog of several human genes including SYT3 (synaptotagmin 3); SYT6 (synaptotagmin 6); and SYT9 (synaptotagmin 9). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R12A1.2a | |||||||
| R12A1.2b | |||||||||
| R12A1.2c | |||||||||
| R12A1.2d | |||||||||
| Corresponding_transcript | R12A1.2a.1 | ||||||||
| R12A1.2b.1 | |||||||||
| R12A1.2c.1 | |||||||||
| R12A1.2d.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf668760 | ||||||||
| WBsf718284 | |||||||||
| WBsf999320 | |||||||||
| WBsf999321 | |||||||||
| WBsf1019174 | |||||||||
| WBsf233331 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017785 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112398 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051825 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095697 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034876 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010564 | ||||||||
| Expr1155484 | |||||||||
| Expr2015980 | |||||||||
| Expr2034215 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction | WBInteraction000210718 | ||||||||
| WBInteraction000242791 | |||||||||
| WBInteraction000250599 | |||||||||
| WBInteraction000407493 | |||||||||
| WBInteraction000432274 | |||||||||
| WBInteraction000440448 | |||||||||
| WBInteraction000548592 | |||||||||
| Map_info | Map | V | Position | -19.0947 | Error | 0.071146 | |||
| Positive | Positive_clone | R12A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
