WormBase Tree Display for Gene: WBGene00004923
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| WBGene00004923 | Evidence | Person_evidence | WBPerson508 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y75B7AL | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snt-3 | Person_evidence | WBPerson508 | |||||
| Sequence_name | Y75B7AL.3 | ||||||||
| Molecular_name | Y75B7AL.3 | ||||||||
| Y75B7AL.3.1 | |||||||||
| CE48486 | |||||||||
| Y75B7AL.3.2 | |||||||||
| Y75B7AL.3.3 | |||||||||
| Other_name | CELE_Y75B7AL.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | snt-3 | ||||||||
| DB_info | Database | AceView | gene | 5B836 | |||||
| WormQTL | gene | WBGene00004923 | |||||||
| WormFlux | gene | WBGene00004923 | |||||||
| NDB | locus_tag | CELE_Y75B7AL.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004923|UniProtKB=Q965S5 | |||||||
| family | PTHR10024 | ||||||||
| NCBI | gene | 190698 | |||||||
| RefSeq | protein | NM_001392474.1 | |||||||
| TrEMBL | UniProtAcc | Q965S5 | |||||||
| UniProt_GCRP | UniProtAcc | Q965S5 | |||||||
| OMIM | gene | 600104 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snt | ||||||||
| Allele (232) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (53) | |||||||||
| Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004922 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004924 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables calcium ion sensor activity and calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to be located in axon; plasma membrane; and secretory vesicle. Expressed in body wall musculature; neurons; and somatic nervous system. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 7. Is an ortholog of human SYT1 (synaptotagmin 1) and SYT2 (synaptotagmin 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110659 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11510) | ||||
| DOID:3635 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11510) | ||||||
| Molecular_info | Corresponding_CDS | Y75B7AL.3 | |||||||
| Corresponding_CDS_history | Y75B7AL.3:wp155 | ||||||||
| Y75B7AL.3:wp216 | |||||||||
| Y75B7AL.3:wp238 | |||||||||
| Corresponding_transcript | Y75B7AL.3.1 | ||||||||
| Y75B7AL.3.2 | |||||||||
| Y75B7AL.3.3 | |||||||||
| Other_sequence (69) | |||||||||
| Associated_feature | WBsf718282 | ||||||||
| WBsf999315 | |||||||||
| WBsf999316 | |||||||||
| WBsf1019170 | |||||||||
| WBsf1019171 | |||||||||
| WBsf233328 | |||||||||
| WBsf233329 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058430 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112396 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15676 | ||||||||
| Expr15677 | |||||||||
| Expr1025704 | |||||||||
| Expr1032452 | |||||||||
| Expr1161850 | |||||||||
| Expr2015978 | |||||||||
| Expr2034213 | |||||||||
| Drives_construct | WBCnstr00042473 | ||||||||
| Construct_product | WBCnstr00042474 | ||||||||
| Microarray_results | 176195_at | ||||||||
| GPL14144_Y75B7AL.3_523-582_0.881_22_C | |||||||||
| GPL14144_Y75B7AL.3_765-824_0.898_13_B | |||||||||
| GPL19516_CGZ0054742 | |||||||||
| GPL21109_Y75B7AL.3 | |||||||||
| GPL3518_CE26302 | |||||||||
| GPL8673_Y75B7AL_3P00666 | |||||||||
| Expression_cluster (121) | |||||||||
| Map_info | Map | V | Position | -19.5443 | Error | 0.066466 | |||
| Positive | Positive_clone | Y75B7AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00052782 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061027 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
