WormBase Tree Display for Gene: WBGene00004926
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| WBGene00004926 | Evidence | Person_evidence | WBPerson508 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C08G5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snt-6 | Person_evidence | WBPerson508 | |||||
| Sequence_name | C08G5.4 | ||||||||
| Molecular_name | C08G5.4a | ||||||||
| C08G5.4a.1 | |||||||||
| CE34672 | |||||||||
| C08G5.4b | |||||||||
| CE46215 | |||||||||
| C08G5.4c | |||||||||
| CE51225 | |||||||||
| C08G5.4b.1 | |||||||||
| C08G5.4c.1 | |||||||||
| Other_name | CELE_C08G5.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | snt-6 | ||||||||
| DB_info | Database | AceView | gene | 2B30 | |||||
| WormQTL | gene | WBGene00004926 | |||||||
| WormFlux | gene | WBGene00004926 | |||||||
| NDB | locus_tag | CELE_C08G5.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004926|UniProtKB=G4RXP2 | |||||||
| family | PTHR10024 | ||||||||
| NCBI | gene | 182427 | |||||||
| RefSeq | protein | NM_001267093.2 | |||||||
| NM_001318279.3 | |||||||||
| NM_001267094.2 | |||||||||
| TrEMBL | UniProtAcc | Q9TZL3 | |||||||
| G4RXP2 | |||||||||
| A0A0S4XQZ9 | |||||||||
| UniProt_GCRP | UniProtAcc | G4RXP2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snt | ||||||||
| Allele (115) | |||||||||
| Strain | WBStrain00033195 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004922 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004923 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004924 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Is an ortholog of human SYT7 (synaptotagmin 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C08G5.4a | |||||||
| C08G5.4b | |||||||||
| C08G5.4c | |||||||||
| Corresponding_CDS_history | C08G5.4:wp104 | ||||||||
| Corresponding_transcript | C08G5.4a.1 | ||||||||
| C08G5.4b.1 | |||||||||
| C08G5.4c.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf986476 | ||||||||
| WBsf986477 | |||||||||
| WBsf1011430 | |||||||||
| WBsf1011431 | |||||||||
| WBsf222625 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010486 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028696 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112399 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040137 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012041 | ||||||||
| Expr1032454 | |||||||||
| Expr1144211 | |||||||||
| Expr2015981 | |||||||||
| Expr2034216 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (182) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | II | Position | -15.591 | Error | 9e-05 | |||
| Positive | Positive_clone | C08G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
