WormBase Tree Display for Gene: WBGene00004926
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WBGene00004926 | Evidence | Person_evidence | WBPerson508 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C08G5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | snt-6 | Person_evidence | WBPerson508 | |||||
Sequence_name | C08G5.4 | ||||||||
Molecular_name | C08G5.4a | ||||||||
C08G5.4a.1 | |||||||||
CE34672 | |||||||||
C08G5.4b | |||||||||
CE46215 | |||||||||
C08G5.4c | |||||||||
CE51225 | |||||||||
C08G5.4b.1 | |||||||||
C08G5.4c.1 | |||||||||
Other_name | CELE_C08G5.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | snt-6 | ||||||||
DB_info | Database | AceView | gene | 2B30 | |||||
WormQTL | gene | WBGene00004926 | |||||||
WormFlux | gene | WBGene00004926 | |||||||
NDB | locus_tag | CELE_C08G5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004926|UniProtKB=G4RXP2 | |||||||
family | PTHR10024 | ||||||||
NCBI | gene | 182427 | |||||||
RefSeq | protein | NM_001267093.2 | |||||||
NM_001318279.3 | |||||||||
NM_001267094.2 | |||||||||
TrEMBL | UniProtAcc | Q9TZL3 | |||||||
G4RXP2 | |||||||||
A0A0S4XQZ9 | |||||||||
UniProt_GCRP | UniProtAcc | G4RXP2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snt | ||||||||
Allele (115) | |||||||||
Strain | WBStrain00033195 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (49) | |||||||||
Paralog | WBGene00004921 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004922 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004923 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004924 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00011682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Is an ortholog of human SYT7 (synaptotagmin 7). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C08G5.4a | |||||||
C08G5.4b | |||||||||
C08G5.4c | |||||||||
Corresponding_CDS_history | C08G5.4:wp104 | ||||||||
Corresponding_transcript | C08G5.4a.1 | ||||||||
C08G5.4b.1 | |||||||||
C08G5.4c.1 | |||||||||
Other_sequence (28) | |||||||||
Associated_feature | WBsf986476 | ||||||||
WBsf986477 | |||||||||
WBsf1011430 | |||||||||
WBsf1011431 | |||||||||
WBsf222625 | |||||||||
Experimental_info | RNAi_result | WBRNAi00010486 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028696 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112399 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040137 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1012041 | ||||||||
Expr1032454 | |||||||||
Expr1144211 | |||||||||
Expr2015981 | |||||||||
Expr2034216 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (182) | |||||||||
Interaction (51) | |||||||||
Map_info | Map | II | Position | -15.591 | Error | 9e-05 | |||
Positive | Positive_clone | C08G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |