WormBase Tree Display for Gene: WBGene00019154
expand all nodes | collapse all nodes | view schema
| WBGene00019154 | SMap | S_parent | Sequence | H04M03 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | glf-1 | Paper_evidence | WBPaper00025248 | |||||
| Sequence_name | H04M03.4 | ||||||||
| Molecular_name | H04M03.4 | ||||||||
| H04M03.4.1 | |||||||||
| CE38614 | |||||||||
| Other_name | CELE_H04M03.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | glf-1 | ||||||||
| DB_info | Database | AceView | gene | 4G653 | |||||
| WormQTL | gene | WBGene00019154 | |||||||
| WormFlux | gene | WBGene00019154 | |||||||
| NDB | locus_tag | CELE_H04M03.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019154|UniProtKB=G5ECS4 | |||||||
| family | PTHR42923 | ||||||||
| NCBI | gene | 177358 | |||||||
| RefSeq | protein | NM_068483.5 | |||||||
| TREEFAM | TREEFAM_ID | TF318619 | |||||||
| TrEMBL | UniProtAcc | G5ECS4 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECS4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Oct 2006 14:11:34 | WBPerson2970 | Name_change | CGC_name | glf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glf | ||||||||
| Allele (44) | |||||||||
| Strain | WBStrain00036541 | ||||||||
| WBStrain00004715 | |||||||||
| WBStrain00004716 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012419 | ||||||||
| 00012420 | |||||||||
| 00012421 | |||||||||
| 00012422 | |||||||||
| 00012423 | |||||||||
| 00012424 | |||||||||
| 00124063 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00000137 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00000138 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000139 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00005010 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011615 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016061 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | glf-1 encodes a UDP-galactopyranose mutase predicted to synthesize galactofuranose (Gal(f)) as a nucleotide sugar (UDP-Gal(f)); recombinant GLF-1 has biochemical activity either in vivo (expressed in E. coli) or in vitro; orthologs of GLF-1 are found in the urochordates Halocynthia and Ciona. | Paper_evidence | WBPaper00025248 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 28 Oct 2009 00:00:00 | ||||||||
| Automated_description | Enables UDP-galactopyranose mutase activity. Involved in polysaccharide biosynthetic process. Located in cytoplasm. Expressed in hypodermis; muscle cell; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H04M03.4 | |||||||
| Corresponding_CDS_history | H04M03.4:wp143 | ||||||||
| Corresponding_transcript | H04M03.4.1 | ||||||||
| Other_sequence (49) | |||||||||
| Associated_feature | WBsf996618 | ||||||||
| WBsf1017440 | |||||||||
| WBsf228345 | |||||||||
| WBsf228346 | |||||||||
| WBsf228347 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr3373 | ||||||||
| Expr3388 | |||||||||
| Expr8791 | |||||||||
| Expr8792 | |||||||||
| Expr1020447 | |||||||||
| Expr1038270 | |||||||||
| Expr1153036 | |||||||||
| Expr2012091 | |||||||||
| Expr2030327 | |||||||||
| Drives_construct | WBCnstr00005811 | ||||||||
| WBCnstr00005812 | |||||||||
| WBCnstr00005813 | |||||||||
| WBCnstr00011370 | |||||||||
| WBCnstr00013528 | |||||||||
| WBCnstr00026022 | |||||||||
| Construct_product | WBCnstr00005811 | ||||||||
| WBCnstr00005812 | |||||||||
| WBCnstr00005813 | |||||||||
| WBCnstr00013528 | |||||||||
| WBCnstr00026022 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (306) | |||||||||
| Interaction (157) | |||||||||
| Map_info | Map | IV | Position | 2.45941 | Error | 0.001904 | |||
| Positive | Positive_clone | H04M03 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
