WormBase Tree Display for Gene: WBGene00019154
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WBGene00019154 | SMap | S_parent | Sequence | H04M03 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | glf-1 | Paper_evidence | WBPaper00025248 | |||||
Sequence_name | H04M03.4 | ||||||||
Molecular_name | H04M03.4 | ||||||||
H04M03.4.1 | |||||||||
CE38614 | |||||||||
Other_name | CELE_H04M03.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | glf-1 | ||||||||
DB_info | Database | AceView | gene | 4G653 | |||||
WormQTL | gene | WBGene00019154 | |||||||
WormFlux | gene | WBGene00019154 | |||||||
NDB | locus_tag | CELE_H04M03.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019154|UniProtKB=G5ECS4 | |||||||
family | PTHR42923 | ||||||||
NCBI | gene | 177358 | |||||||
RefSeq | protein | NM_068483.5 | |||||||
TREEFAM | TREEFAM_ID | TF318619 | |||||||
TrEMBL | UniProtAcc | G5ECS4 | |||||||
UniProt_GCRP | UniProtAcc | G5ECS4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 16 Oct 2006 14:11:34 | WBPerson2970 | Name_change | CGC_name | glf-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | glf | ||||||||
Allele (44) | |||||||||
Strain | WBStrain00036541 | ||||||||
WBStrain00004715 | |||||||||
WBStrain00004716 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00012419 | ||||||||
00012420 | |||||||||
00012421 | |||||||||
00012422 | |||||||||
00012423 | |||||||||
00012424 | |||||||||
00124063 | |||||||||
Ortholog (34) | |||||||||
Paralog | WBGene00000137 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00000138 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000139 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00005010 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00011615 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016061 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | glf-1 encodes a UDP-galactopyranose mutase predicted to synthesize galactofuranose (Gal(f)) as a nucleotide sugar (UDP-Gal(f)); recombinant GLF-1 has biochemical activity either in vivo (expressed in E. coli) or in vitro; orthologs of GLF-1 are found in the urochordates Halocynthia and Ciona. | Paper_evidence | WBPaper00025248 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 28 Oct 2009 00:00:00 | ||||||||
Automated_description | Enables UDP-galactopyranose mutase activity. Involved in polysaccharide biosynthetic process. Located in cytoplasm. Expressed in hypodermis; muscle cell; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | H04M03.4 | |||||||
Corresponding_CDS_history | H04M03.4:wp143 | ||||||||
Corresponding_transcript | H04M03.4.1 | ||||||||
Other_sequence | MHC01934_1 | ||||||||
JI169563.1 | |||||||||
EX564350.1 | |||||||||
JI471873.1 | |||||||||
FC809702.1 | |||||||||
MH06075 | |||||||||
FC815356.1 | |||||||||
Dviv_isotig23158 | |||||||||
BXC02045_1 | |||||||||
Hbac_isotig02912 | |||||||||
MH04489 | |||||||||
FC815023.1 | |||||||||
RS09910 | |||||||||
SR00328 | |||||||||
FC809990.1 | |||||||||
BUC01849_1 | |||||||||
PSC01434_1 | |||||||||
SS00414 | |||||||||
MH06074 | |||||||||
HG01055 | |||||||||
FC809445.1 | |||||||||
Tcol_isotig19198 | |||||||||
CRC08549_1 | |||||||||
GO251125.1 | |||||||||
MA01137 | |||||||||
SRC07420_2 | |||||||||
MHC11590_1 | |||||||||
SRC07420_1 | |||||||||
FC815182.1 | |||||||||
MHC02588_1 | |||||||||
MHC02350_1 | |||||||||
JI475373.1 | |||||||||
PPC09129_1 | |||||||||
MH05403 | |||||||||
SSC03048_1 | |||||||||
EX910317.1 | |||||||||
JI468174.1 | |||||||||
ACC20107_1 | |||||||||
HBC20315_1 | |||||||||
JI170644.1 | |||||||||
RSC01689_1 | |||||||||
MAC00444_1 | |||||||||
SRC00186_1 | |||||||||
FC809831.1 | |||||||||
HGC03542_1 | |||||||||
GW408294.1 | |||||||||
CJC01775_1 | |||||||||
FC814730.1 | |||||||||
BXC04346_1 | |||||||||
Associated_feature | WBsf996618 | ||||||||
WBsf1017440 | |||||||||
WBsf228345 | |||||||||
WBsf228346 | |||||||||
WBsf228347 | |||||||||
Experimental_info | RNAi_result (18) | ||||||||
Expr_pattern | Expr3373 | ||||||||
Expr3388 | |||||||||
Expr8791 | |||||||||
Expr8792 | |||||||||
Expr1020447 | |||||||||
Expr1038270 | |||||||||
Expr1153036 | |||||||||
Expr2012091 | |||||||||
Expr2030327 | |||||||||
Drives_construct | WBCnstr00005811 | ||||||||
WBCnstr00005812 | |||||||||
WBCnstr00005813 | |||||||||
WBCnstr00011370 | |||||||||
WBCnstr00013528 | |||||||||
WBCnstr00026022 | |||||||||
Construct_product | WBCnstr00005811 | ||||||||
WBCnstr00005812 | |||||||||
WBCnstr00005813 | |||||||||
WBCnstr00013528 | |||||||||
WBCnstr00026022 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (306) | |||||||||
Interaction (157) | |||||||||
Map_info | Map | IV | Position | 2.45941 | Error | 0.001904 | |||
Positive | Positive_clone | H04M03 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |